PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g009230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 215aa MW: 24944.3 Da PI: 8.0921 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.4 | 2.9e-29 | 46 | 135 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ +GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vk+ek+g+w vtk+++eHnH+l p Csa15g009230.1 46 SFYDNYATVMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRR-SENRKPRAITREGCKALIVVKREKSGEWLVTKFVKEHNHPLLP 135 5********************************************99.9***************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-27 | 46 | 135 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
EENSLPEEDV EMIENSDGKD IVSNEASPMV EPFIGMEFES EESAKSFYDN YATVMGFVMR 60 VDAFRRSMRD GTVVWRRLVC NKEGFRRSRP RRSENRKPRA ITREGCKALI VVKREKSGEW 120 LVTKFVKEHN HPLLPLSPNV RRNPHLSQTP DEKDAKIREL SAELSRERKR CAALQQQLDM 180 VLKEMEEHSN HLSTNINNVI QRVREIESNT FTKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g009230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004031 | 0.0 | BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds. | |||
GenBank | BT005083 | 0.0 | BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010464374.1 | 1e-157 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Swissprot | Q9SZL8 | 7e-29 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | Q84JA7 | 1e-128 | Q84JA7_ARATH; Far-red impaired responsive (FAR1) family protein | ||||
STRING | XP_010464374.1 | 1e-157 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-130 | FAR1 family protein |
Publications ? help Back to Top | |||
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