PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GATA

Protein Properties

Length: 144aa MW: 15432.7 Da PI: 10.0598

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g008400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.8	1.1e-16	42	76	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt k plWR+gp g+k+LCnaCG+++rkk++ Csa15g008400.1 42 CAICGTNKPPLWRSGPAGPKSLCNACGIRNRKKRR 76 999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.38E-12	35	93	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.9E-13	36	89	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.569	36	72	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.8E-12	36	87	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.11E-13	41	92	No hit	No description
Pfam	PF00320	1.7E-14	42	76	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MLDPTVKVFE SEAMGDSIEE HSSSNSNGGG GIISSSNEKK SCAICGTNKP PLWRSGPAGP 60 KSLCNACGIR NRKKRRTVIS NRSEDKIKKM KNPKLGDSLK QRLLELGREV MMQRSTTAGN 120 KLGEDEQAAV LLMALSYASS VYA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00335	DAP	Transfer from AT3G06740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g008400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY063926	5e-83	AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
GenBank	AY084525	5e-83	AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence.
GenBank	AY091250	5e-83	AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464261.1	1e-101	PREDICTED: GATA transcription factor 15-like
Swissprot	Q8LG10	1e-68	GAT15_ARATH; GATA transcription factor 15
TrEMBL	A0A1J3ELK9	4e-67	A0A1J3ELK9_NOCCA; GATA transcription factor 15
STRING	XP_010464261.1	1e-101	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5050	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	2e-64	GATA transcription factor 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982]