PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g007970.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 406aa MW: 42501.4 Da PI: 7.828

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g007970.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.3	5.2e-13	56	81	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ Csa15g007970.2 56 DEPDCIYYMRTGVCGYGSRCRFNHPR 81 6899********************96 PP
2	zf-CCCH	37.4	4.4e-12	104	128	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ Csa15g007970.2 104 HPVCQHFMRTGTCKFGASCKYHHPR 128 789********************96 PP
3	zf-CCCH	40.2	5.5e-13	251	275	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ Csa15g007970.2 251 DQPECQYFMRTGDCKFGSSCRYHHP 275 689*********************9 PP
4	zf-CCCH	29.7	1.1e-09	297	322	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +f + G+Ck+G+ CkF H++ Csa15g007970.2 297 GVAQCTHFTQHGICKFGPACKFDHSM 322 6788********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.8E-5	54	81	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.108	54	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-10	56	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	58	82	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	60	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-6	101	128	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.619	101	129	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	102	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.6E-10	103	128	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-5	106	128	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.5E-6	249	276	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.854	249	277	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-10	251	275	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	252	278	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	255	275	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	295	322	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.554	295	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-7	297	321	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-5	298	323	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-4	301	322	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MERYGRPGEE GSRSDPSLEW TSHGGDTGLE ASMWRLGLSG GGGGGGGGEP YPERPDEPDC 60 IYYMRTGVCG YGSRCRFNHP RDRGAVIGGG VRGEAGALPE RMGHPVCQHF MRTGTCKFGA 120 SCKYHHPRQG GSGSVAPVSL SYLGFPLRQG EKECSYYMRT VLTRPSLLPG PYLQSPYGPP 180 MVLPPGMVPY PGWHPYQASL SAMPSPGTQP SIGSSSVYGI APLSPSATVY TGQYQSGPSS 240 NTSKDFPQRP DQPECQYFMR TGDCKFGSSC RYHHPVDAVP PKTGLVLSSI GLPLRPGVAQ 300 CTHFTQHGIC KFGPACKFDH SMSSSLSYSP SASSLTDMPV APYPIGSSSL SGSSAPASSS 360 NEPTKEAATA AVSSSTVSSL SRPEPAETSG DSASVSGSIE AKTSS*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MERYGRPGEE GSRSDPSLEW TSHGGDTGLE ASMWRLGLSG GGGGGGGGEP YPERPDEPDC  60
IYYMRTGVCG YGSRCRFNHP RDRGAVIGGG VRGEAGALPE RMGHPVCQHF MRTGTCKFGA  120
SCKYHHPRQG GSGSVAPVSL SYLGFPLRQG EKECSYYMRT VLTRPSLLPG PYLQSPYGPP  180
MVLPPGMVPY PGWHPYQASL SAMPSPGTQP SIGSSSVYGI APLSPSATVY TGQYQSGPSS  240
NTSKDFPQRP DQPECQYFMR TGDCKFGSSC RYHHPVDAVP PKTGLVLSSI GLPLRPGVAQ  300
CTHFTQHGIC KFGPACKFDH SMSSSLSYSP SASSLTDMPV APYPIGSSSL SGSSAPASSS  360
NEPTKEAATA AVSSSTVSSL SRPEPAETSG DSASVSGSIE AKTSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g007970.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK230438	0.0	AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297647.1	0.0	zinc finger CCCH domain-containing protein 34
Swissprot	Q9SQU4	0.0	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	R0HYC6	0.0	R0HYC6_9BRAS; Uncharacterized protein
STRING	Cagra.0922s0006.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-177	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]