PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g007970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 464aa    MW: 48935.7 Da    PI: 8.0495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g007970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16.1e-135681227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  Csa15g007970.1 56 DEPDCIYYMRTGVCGYGSRCRFNHPR 81
                    6899********************96 PP
2zf-CCCH37.15.2e-12104128327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f+rtGtCk+G++Ck++H++
  Csa15g007970.1 104 HPVCQHFMRTGTCKFGASCKYHHPR 128
                     789********************96 PP
3zf-CCCH391.4e-12150174226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G +C+F+H+
  Csa15g007970.1 150 GEKECSYYMRTGQCKFGLTCRFNHP 174
                     6789********************9 PP
4zf-CCCH406.5e-13309333226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f+rtG Ck+G++C+++H+
  Csa15g007970.1 309 DQPECQYFMRTGDCKFGSSCRYHHP 333
                     689*********************9 PP
5zf-CCCH29.41.3e-09355380227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + + C +f + G+Ck+G+ CkF H++
  Csa15g007970.1 355 GVAQCTHFTQHGICKFGPACKFDHSM 380
                     6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1085482IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-55481IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-105681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-56081IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6102128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5106128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089148176IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5148175IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10150174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4154173IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854307335IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10309333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554353381IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4353380IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5356381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4359380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MERYGRPGEE GSRSDPSLEW TSHGGDTGLE ASMWRLGLSG GGGGGGGGEP YPERPDEPDC  60
IYYMRTGVCG YGSRCRFNHP RDRGAVIGGG VRGEAGALPE RMGHPVCQHF MRTGTCKFGA  120
SCKYHHPRQG GSGSVAPVSL SYLGFPLRQG EKECSYYMRT GQCKFGLTCR FNHPVPLAVQ  180
GPPQPQQQQL QPQPQPQLQT IYPTLQSQPV PSSQQYGLVL TRPSLLPGPY LQSPYGPPMV  240
LPPGMVPYPG WHPYQASLSA MPSPGTQPSI GSSSVYGIAP LSPSATVYTG QYQSGPSSNT  300
SKDFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGLVLSSIGL PLRPGVAQCT  360
HFTQHGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP YPIGSSSLSG SSAPASSSNE  420
PTKEAATAAV SSSTVSSLSR PEPAETSGDS ASVSGSIEAK TSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g007970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464213.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_010464213.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]