PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g005930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 448aa MW: 49129.5 Da PI: 4.6014 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120 | 1.2e-37 | 133 | 231 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++d+ ++++g s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+k Csa15g005930.1 133 LFQRLWTDEDEIELLRGFLDYmTTHRGNSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRK 227 79*******************888999999989************************************************************** PP DUF573 95 iWgs 98 iW++ Csa15g005930.1 228 IWNQ 231 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.2E-34 | 134 | 230 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MTSDHRDAVF SLESPDLEEA GVGDGVESDT DEDLRENDDV DVVIPETNED DDPEEEDLNS 60 PSTSSLAMVS TISATAVVSG TPTTNSSTGA VTVALPAGSA VPVSVIPVDS DPKWHRMTEI 120 VHQRPPIDDS RRLFQRLWTD EDEIELLRGF LDYMTTHRGN SSHPPDTAPF YEQIKSKLQL 180 EFNKNQLVEK LRRLKKKYRN VMSKISSGKE VFFKSPHDQS TFEISRKIWN QTGKIIGFED 240 NNVMDFDETN NHNHSTNGNY STFNSPSSNN PELDSENGVE KKLTMSSSSG SRKRSRSRIG 300 KIEEDNKPVI APFDGQIPNA ASNVNLNDTI SMGVNLGGLI EETVKNCVSP VIKELMNGTT 360 SVMMAAMGGG GFPGSGGGGF GSLSPMFTRQ MNFGFGVEGG GGNKAVADER WRKQQILELE 420 VYSRRLELVQ EQIRTTLNEL KTMPSGV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 292 | 297 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g005930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY070136 | 0.0 | AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010463980.1 | 0.0 | PREDICTED: probable transcription factor At3g04930 | ||||
Swissprot | Q9CAV7 | 0.0 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | R0I2K6 | 0.0 | R0I2K6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010463980.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator |