PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g005930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 448aa    MW: 49129.5 Da    PI: 4.6014
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g005930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731201.2e-37133231298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+k
  Csa15g005930.1 133 LFQRLWTDEDEIELLRGFLDYmTTHRGNSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRK 227
                     79*******************888999999989************************************************************** PP

          DUF573  95 iWgs 98 
                     iW++
  Csa15g005930.1 228 IWNQ 231
                     **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-34134230IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEA GVGDGVESDT DEDLRENDDV DVVIPETNED DDPEEEDLNS  60
PSTSSLAMVS TISATAVVSG TPTTNSSTGA VTVALPAGSA VPVSVIPVDS DPKWHRMTEI  120
VHQRPPIDDS RRLFQRLWTD EDEIELLRGF LDYMTTHRGN SSHPPDTAPF YEQIKSKLQL  180
EFNKNQLVEK LRRLKKKYRN VMSKISSGKE VFFKSPHDQS TFEISRKIWN QTGKIIGFED  240
NNVMDFDETN NHNHSTNGNY STFNSPSSNN PELDSENGVE KKLTMSSSSG SRKRSRSRIG  300
KIEEDNKPVI APFDGQIPNA ASNVNLNDTI SMGVNLGGLI EETVKNCVSP VIKELMNGTT  360
SVMMAAMGGG GFPGSGGGGF GSLSPMFTRQ MNFGFGVEGG GGNKAVADER WRKQQILELE  420
VYSRRLELVQ EQIRTTLNEL KTMPSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g005930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463980.10.0PREDICTED: probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGXP_010463980.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator