PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g003920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 410aa    MW: 46413.9 Da    PI: 6.6353
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g003920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.2e-344599155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  Csa15g003920.1 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.22742102IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-3143100IPR009057Homeodomain-like
SuperFamilySSF466894.84E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2345100IPR006447Myb domain, plants
PfamPF002494.8E-104798IPR001005SANT/Myb domain
PfamPF143795.9E-26146192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MYYQNQHQGK NILSSSRMHI TTERNPFLRG NSPGESGLIL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSG LNKIGMMTMM  120
EEKTPDVDEI QSENLSIGPQ PNMNSPISEA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSVLEKAQ ETLGRQNLGA AGIEAAKVQL SELVSKVSAE YPNSSFLEPK ELQNLCPQQI  240
QTTTYPPDCS LESCLTSSEG TQKTLENNRI GLRTYLGDST SEQKENMEEE PLFQRMELTW  300
TEGLRGNNNP YLSTMVSETE QRIPYSERSP GRLSIGVGLQ GHKGHHHQQG NNEYTEERFK  360
DKSEDHKFET RNHRKGTDSA TELDLNTHVE SYSTTTRTKQ FDLNGFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g003920.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2220890.0HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463875.10.0PREDICTED: myb-related protein 2-like isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLR0G5G20.0R0G5G2_9BRAS; Uncharacterized protein
STRINGXP_010463875.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]