PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g002700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 472aa    MW: 52087 Da    PI: 4.7119
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g002700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ +++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ l++
  Csa15g002700.1  25 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQILKS 110
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  Csa15g002700.1 111 IVRRKP 116
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.8E-3819109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.84E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGSICESVPT ANSSTAVMGG SIPPFLSKTY DMVDDPLTDD VVSWSSGNNS FVVWNVPEFA  60
KQFLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKQILKS IVRRKPAQVQ  120
PQQQPQVQHS SVGACVEVGK FGLEEEVDRL QRDKNVLMQE LVRLRQQQQV TEHHLQNVGQ  180
KVHVMEQRQQ QMMSFLAKAV QSPGFLNQFS QQSNDANQHI SESNKKRRLP VEDQKNSGSY  240
GVNGLISRQI VRYQSSMNDA ANTMLQQIQQ MSNSPSHESL SSNHGSFLLG DVPSSNISDN  300
GSSSNGSSGV TLADVSSNPA ASLYPAMKYH DPCETNQVLE TTLPYSQGDL LAPTQVAAAS  360
GGSNLDFVGC EIDNGECLDP IMAVLDGPIE LEDGVINELL PEVQDSFWGQ FLGETPVIGD  420
KDELISGSVD NELIMEHLEL QSSLSNGWSK NQQMNHLTEQ MGLLTSDALR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-262111425129Heat shock factor protein 1
5d5v_B5e-262111425129Heat shock factor protein 1
5d5v_D5e-262111425129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g002700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463737.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLR0HYA00.0R0HYA0_9BRAS; Uncharacterized protein
STRINGXP_010463737.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]