PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g002520.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 405aa    MW: 44787.2 Da    PI: 7.8788
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g002520.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-114167127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  Csa15g002520.2 41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
                    5789*********************96 PP
2zf-CCCH37.53.8e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tGtCk+G +CkF+H++
  Csa15g002520.2  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                     799********************96 PP
3zf-CCCH33.76.2e-11134158327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f rtG+Ck+G++CkF+H++
  Csa15g002520.2 134 EVDCAYFIRTGHCKFGGTCKFNHPQ 158
                     578********************97 PP
4zf-CCCH37.15.4e-12277303127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G  CkF+H++
  Csa15g002520.2 277 PGQPECQFYMKTGDCKFGTVCKFHHPR 303
                     5789*********************96 PP
5zf-CCCH35.31.9e-11323349127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f+ r+G+Ck+G++CkF H++
  Csa15g002520.2 323 PGEPLCVFYTRYGICKFGPSCKFDHPM 349
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6994068IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44667IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-491112IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08131159IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6134160IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22276304IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4282304IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187322350IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8324349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4327347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006974Biological Processcellular response to DNA damage stimulus
GO:0007049Biological Processcell cycle
GO:0048478Biological Processreplication fork protection
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLGSEE TMETGSYPER PGEPDCSYYI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF IRTGHCKFGG TCKFNHPQPQ PTNMMVPTSG QQSYPWSRAS  180
FIASPRWQDP STYPSLIMPQ GVVPVQGWNP YSGQLGSVSP SGTGNDLNYN RSLQQQSETK  240
ESGSQSQGSF SGFNPGSSVP LGGFYALPRE NVFPERPGQP ECQFYMKTGD CKFGTVCKFH  300
HPRDRQAPPP DCLLSSIGLP LRPGEPLCVF YTRYGICKFG PSCKFDHPMR VFAYDNTASE  360
TDEVVETSSS GHSRRISVSE TRQAAATTTT SSGKDTTTII DTQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g002520.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463709.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A178VJ680.0A0A178VJ68_ARATH; ZFN1
STRINGXP_010463709.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]