PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g001700.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 363aa MW: 40346.4 Da PI: 7.0714

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g001700.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.6	3.3e-32	69	190	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++ ++++s + ++ + Csa15g001700.1 69 FGGKDRHSKVSTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSlfNHHQSFLNLGQRPVHqdptql 163 689*************************************************************9999988877666666666644444566667 PP TCP 89 .............kaaksaakskksqksaa 105 s+ + ++++k ++ Csa15g001700.1 164 gfkinggcveetsT---SSREVNNKEKGDN 190 77777777764331...2222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.122	71	129	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-28	71	175	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNIMPWKDAN DEVSGGAATR REGDVEEDQE EDQARATSGK TVNKKPPTSS SSSWMKSKDP 60 RIVRVSRAFG GKDRHSKVST LRGLRDRRVR LSVPTAIQLY DLQERLGVDQ PSKAVDWLLD 120 AAKEEIDELP PLPISPENFS LFNHHQSFLN LGQRPVHQDP TQLGFKINGG CVEETSTSSR 180 EVNNKEKGDN DVVFTNNHHH IGSYGTYHHN MEHHHHHHHQ HQQYLSFQGD YHQHQLHSLV 240 PFPSQILVCP MTTSTTTTTI QSLFPSSSSA GSGTMETIDP RQMASHFQMP LMGNSSSSSS 300 QNISTLYSLL HGSSSNNNGG RDINNRMPYV QFSRDNITTA ASMSKLQGSE SSSTSRGSEH 360 HM*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNIMPWKDAN DEVSGGAATR REGDVEEDQE EDQARATSGK TVNKKPPTSS SSSWMKSKDP  60
RIVRVSRAFG GKDRHSKVST LRGLRDRRVR LSVPTAIQLY DLQERLGVDQ PSKAVDWLLD  120
AAKEEIDELP PLPISPENFS LFNHHQSFLN LGQRPVHQDP TQLGFKINGG CVEETSTSSR  180
EVNNKEKGDN DVVFTNNHHH IGSYGTYHHN MEHHHHHHHQ HQQYLSFQGD YHQHQLHSLV  240
PFPSQILVCP MTTSTTTTTI QSLFPSSSSA GSGTMETIDP RQMASHFQMP LMGNSSSSSS  300
QNISTLYSLL HGSSSNNNGG RDINNRMPYV QFSRDNITTA ASMSKLQGSE SSSTSRGSEH  360
HM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-19	76	130	1	55	Putative transcription factor PCF6
5zkt_B	2e-19	76	130	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:11161017, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g001700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010463608.1	0.0	PREDICTED: transcription factor TCP13-like
Swissprot	Q9S7W5	0.0	TCP13_ARATH; Transcription factor TCP13
TrEMBL	A0A178VKM0	0.0	A0A178VKM0_ARATH; TFPD
STRING	XP_010463609.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9134	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.2	1e-160	plastid transcription factor 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Yamburenko MV,Zubo YO,Börner T Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5. Plant J., 2015. 82(6): p. 1030-41 [PMID:25976841] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]