PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g001570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 315aa    MW: 35745.4 Da    PI: 9.9381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g001570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047282304123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+Fs+   L  H+  H
  Csa15g001570.1 282 HRCGLCDKVFSTYQALGGHQTFH 304
                     79*************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.487497IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36574102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807697IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-5281306No hitNo description
PfamPF139121.9E-7282305IPR007087Zinc finger, C2H2
SMARTSM003550.31282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078282309IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDHHQEFEK SIFEFVPNKL RNSLVSRNRK MKNGFRDSMS HYEELSSSYG LRKNPKKTQK  60
SLLVHPRTNK KSLIRCRECG KGFLYEKCLL NHRQVTHSEE SVRRSLFCSF SVVQKRKRSK  120
RVSRYKKKRT PFSVSSSSSS SFTMFPVSVD DDGELLEVAE SLILLSMSGG KFMHGLEIFG  180
KALDSNQETN QRESGYGFLR NKQKLVAEAL DGDGEESNGR SKELSDFLAD KKAREGDESG  240
QQKQVGAGML IEEIEQKLVG QETVFGDSDS GNKGFLMNID EHRCGLCDKV FSTYQALGGH  300
QTFHRIRNKS KSRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113120QKRKRSKR
2114128KRKRSKRVSRYKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g001570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467968.10.0PREDICTED: uncharacterized protein LOC104747963
TrEMBLQ9MAB71e-127Q9MAB7_ARATH; T4P13.29 protein
STRINGXP_010467968.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.12e-16C2H2 family protein