PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g061770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 846aa    MW: 97517.3 Da    PI: 6.5104
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g061770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.6e-16104179181
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                     ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++ +w+v+  
  Csa14g061770.1 104 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSTRWRVQAS 179
                     69*****************************************9988.....999***********************875 PP
2FAR168.12.2e-21269352189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++ +w+v ++ l+HnH l
  Csa14g061770.1 269 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSTRWRVLEVTLDHNHLL 352
                     69*****************************************9988.....999********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-13104180IPR004330FAR1 DNA binding domain
PfamPF031011.2E-18269352IPR004330FAR1 DNA binding domain
PfamPF105515.9E-24470562IPR018289MULE transposase domain
PROSITE profilePS509669.606727763IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4735759IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6738765IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MERSEPVDED VQASEYLQND EILERDDPMS DGGCTLRIGD DDEALVCSSD HEIDVGFCQN  60
QERKSVDNAT TGEFDEQSGL LVERKEFEAP LVGMEFESYD DAYNYYNCYA TEVGFRVRVK  120
NSWFKRRSKE KYGAVLCCSS QGFKRINDVN RVRKETRTGC PAMIRMRQVD STRWRVQASE  180
YLQNDEILER DDPMSDGGCT LRIGDDDEAL VCSSDHEIDV GFCQNQERKS VDNATTGEFD  240
EQSGLLVERK EFEAPLVGME FESYDDAYNY YNCYATEVGF RVRVKNSWFK RRSKEKYGAV  300
LCCSSQGFKR INDVNRVRKE TRTGCPAMIR MRQVDSTRWR VLEVTLDHNH LLGSKLYKSV  360
KRNGTKRKCV SSPVSDAKTI KLYRARVMDT VDNVNPSLTL KKQFQNSAGS PDLLNLKKGD  420
SAAIYNYFCR MQLTNPTFFY LMDVNDKGQL RNVFWADAFS KVSCSYFGDV IFIDNSYISG  480
KFEIPLVTFT GVNHHGKTTL LSCGLLAGET MESYHWLLKV WLSVMKCSPQ TIVTDRCKPL  540
EAAISQVFPG SHHRFSLTHI MRKIPEKLGG LHNYDGVRKA LTKAVYETLK VVEFEAAWGF  600
LVHNFGIVDN EWLRSLYEER VKWAPQTPLK EFLDKYELAL QKKHKEETLS DVESLNSNTA  660
ELKTKCSFET QLSRVYTRNM FKKFQVEVEE MYSCFSTTQL HVDGPLVIFL VKERVQGESN  720
RREIRDFEVL YNRSVGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPLR YILPRWRKDY  780
KRIHFAGNGL TGFVDGTDRN QWFDQLYKNA LQVVEEGAVS LDHYKVAMQA LQQSLDKVHS  840
VEERQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g061770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0807750.0AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds.
GenBankAY1337760.0AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF6D80.0AC008016.2 Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500853.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLR0IMD00.0R0IMD0_9BRAS; Uncharacterized protein
STRINGXP_010500853.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]