PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g057240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 466aa    MW: 51638.5 Da    PI: 6.9437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g057240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075198220123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk F++   L  H  +H
  Csa14g057240.1 198 FECSVCGKGFTTYQALGGHKASH 220
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-8197220No hitNo description
SMARTSM003550.029198220IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217198225IPR007087Zinc finger, C2H2
PfamPF139121.8E-11198221IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SuperFamilySSF576674.5E-8247274No hitNo description
SMARTSM003550.1252274IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-12252276IPR007087Zinc finger, C2H2
PROSITE patternPS000280254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDLKTTLDQC PPLRKLTSLK HRFLQPLNQD DLTSYERPKR KYSSLPGNDD GQEDPSWKRI  60
RFKLRREKED DAVFVESPRF KQLTIRQRST SDDSSDTVKH GIEEEGFTSD AVFYKPWFDS  120
LRLKRQRFGE DQDPSSCSPS VDDIAALTLI QFSRDNRQSK TQTLIPQPQT HTQTQTQTQT  180
QTQTHTTQQQ TPVKSDLFEC SVCGKGFTTY QALGGHKASH KVKQPQPLLE NAGADAGDKT  240
RTKMLAPSGK IHKCSICHVV FPTGQALGGH KRRHYEGVLG GQKLSPDSNG SLVTKVLDPE  300
QSLSVSDNVL LSGNYKRNQD EVVHKLSPNS NGSLVTKVLD PELSLSVSEN VLLSGHKRRQ  360
DEFVPCVDKW SLSDASVAKN LVNLELSLGE SNGLLGGQKR SQDGEVVVGE NKWSPSCNGS  420
GVTNVSEPEQ SQRRLIDLNS LPSPEFDESG VRDVEEVDSA IMLAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g057240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463335.10.0PREDICTED: uncharacterized protein LOC104744002
TrEMBLR0I2R11e-146R0I2R1_9BRAS; Uncharacterized protein
STRINGXP_010463335.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-25zinc-finger protein 2