PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g055680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 200aa    MW: 22988.1 Da    PI: 5.8453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g055680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.3e-1436123498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + ++ ++ k+ ++ +p +f+ + g  ++ +  +tle++ g + ++++  ++ +++++++kGW+eF++a+   eg f+ F+++g+s+f   v +f+
  Csa14g055680.1  36 KIINLSTIKETMMKIPERFV-RLG--PKLTDNVTLETPVGFKRSIRI--KRIGNEVWFEKGWSEFAEAHSWSEGHFLFFHYKGKSSF--SVVIFD 123
                     456999999***********.565..446679***************..*********************************99999..787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-1828124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-1830124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-1232123No hitNo description
PROSITE profilePS5086311.1833125IPR003340B3 DNA binding domain
SMARTSM010196.0E-1234125IPR003340B3 DNA binding domain
PfamPF023628.5E-1236123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRNTPTTRRS SVRITSAASQ RRLTPEPEPA VKKFIKIINL STIKETMMKI PERFVRLGPK  60
LTDNVTLETP VGFKRSIRIK RIGNEVWFEK GWSEFAEAHS WSEGHFLFFH YKGKSSFSVV  120
IFDVTASEIE YPLDKVYVIE SDDDDDKEEV MEVMDDDEQG FAGFESSESE GVIELDELLK  180
NKKRKPRVSV KSEKVATFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g055680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461783.11e-143PREDICTED: B3 domain-containing protein At1g49475-like
SwissprotQ9XIB46e-94Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A178WDC15e-93A0A178WDC1_ARATH; Uncharacterized protein
STRINGXP_010461783.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-87B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]