PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g053160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 92aa    MW: 9839.3 Da    PI: 8.8547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g053160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.6e-061235327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++C +++ tG C     Ck++H++
  Csa14g053160.1 12 IPECGNYLLTGNCDL-KECKYHHPM 35
                    589************.*******95 PP
2zf-CCCH29.81.1e-095780326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    +++C++f+r+G Ck G+ CkF H+
  Csa14g053160.1 57 QAICPDFSRFGLCKSGPACKFDHS 80
                    789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.887936IPR000571Zinc finger, CCCH-type
SMARTSM003560.18935IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-75280IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-45481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9765482IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-75780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45981IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSDKKMPTRP GIPECGNYLL TGNCDLKECK YHHPMNKTPI EPGLALNNKG LPLRPNQAIC  60
PDFSRFGLCK SGPACKFDHS SSSSSSSGSK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g053160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461622.15e-61PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU83e-35C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT256e-34R0GT25_9BRAS; Uncharacterized protein
STRINGXP_010461622.12e-60(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.14e-37C3H family protein