PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g051780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family E2F/DP
Protein Properties Length: 400aa    MW: 45461.9 Da    PI: 6.6566
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g051780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.87.8e-28157222171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf+kl++++e+g+++ln++a+ L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Csa14g051780.1 157 RYDSSLGLLTKKFVKLIQEAEDGTLDLNHCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 222
                     6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-29153224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-34157222IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.83E-18157220IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-25159222IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146606.92E-41233339No hitNo description
SuperFamilySSF1440743.4E-29233338No hitNo description
PfamPF164213.9E-26238336IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAATSNSGED PTLSYHHHHH HHRSPFRFEL LQSISSSDPR YSSLTPSSTN RPFSVSESLP  60
QQSPLIPSHW DDSYSHITQK FKSRKNHRIQ LGSIANMSGE SIDDKSKVIV KQESPQYVKR  120
VYNKSKGTTT QSKAGKRMPN GGEAQNGGLI VPSNNCRYDS SLGLLTKKFV KLIQEAEDGT  180
LDLNHCADVL EVQKRRIYDI TNVLEGIGLI EKTTKNHIRW KGADNLGQKD LGDQISRLKS  240
EVEMMQSEES RLDDLIRERQ EALRSLEEDE YCKRYMFMTE EDITSLPRFQ NQTLLAIKAP  300
TASYIEVPDP DEMRFPQRQY RMVIRSRMGP IDVYLLSKYK GDSGETSDKL GQESDQKAPF  360
RVDTPSLKIV TSDTDLKADY WFESDAEVSL TDLWSIFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-25152223274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g051780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2425810.0AF242581.1 Arabidopsis thaliana E2F transcription factor-2 E2F2 mRNA, complete cds.
GenBankAJ4178340.0AJ417834.1 Arabidopsis thaliana mRNA for transcription factor E2Fc (e2Fc gene).
GenBankAY0456360.0AY045636.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds.
GenBankAY0582310.0AY058231.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461585.10.0PREDICTED: transcription factor E2FC-like isoform X2
SwissprotQ9FV700.0E2FC_ARATH; Transcription factor E2FC
TrEMBLD7KBY00.0D7KBY0_ARALL; T2E6.2
STRINGXP_010461584.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.20.0E2F/DP family protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  3. Huntley R, et al.
    The maize retinoblastoma protein homologue ZmRb-1 is regulated during leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins.
    Plant Mol. Biol., 1998. 37(1): p. 155-69
    [PMID:9620273]