PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g043180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 866aa    MW: 95036.8 Da    PI: 6.0503
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g043180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.75.2e-12141181141
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer 41 
                     rW+++e+laL+++r++m++++r++ lk+plWe+vs+  re+
  Csa14g043180.1 141 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSREEREK 181
                     8***********************************99775 PP
2trihelix96.82e-30255339187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++   +++f+qlea
  Csa14g043180.1 255 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 339
                     8*********************************************************************86555..5******985 PP
3trihelix103.81.3e-32629713186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
  Csa14g043180.1 629 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 713
                     8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.054134195IPR017877Myb-like domain
PROSITE profilePS500906.864248312IPR017877Myb-like domain
SMARTSM007170.0076252314IPR001005SANT/Myb domain
CDDcd122039.21E-26254319No hitNo description
PfamPF138371.5E-20254340No hitNo description
SMARTSM007170.011626688IPR001005SANT/Myb domain
PfamPF138378.3E-22628713No hitNo description
PROSITE profilePS500906.667628686IPR017877Myb-like domain
CDDcd122031.56E-28629693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0042631Biological Processcellular response to water deprivation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MEQVGGGGGG NEVVEEASPI SSRPPANLEE LMRFSAAAAD DGGGGGGGGG KILNQTVRAL  60
AREEREKEKR LVRPSRLVKS RDMEQVGGGG GGNEVVEEAS PISSRPPANL EELMRFSAAA  120
ADDGGGGGGG GGSASSSSGN RWPREETLAL LRIRSDMDST FRDATLKAPL WEHVSREERE  180
KEKRLVRPSR LVKSRDMEQV GGGGGGNEVV EEASPISSRP PANLEELMRF SAAAADDGGG  240
GGGGGGSASS SSGNRWPREE TLALLRIRSD MDSTFRDATL KAPLWEHVSR KLLELGYKRS  300
AKKCKEKFEN VQKYYKRTKE TRGGRHDGKA YKFFSQLEAL NTTPTPPPSH PPSSSLDVTP  360
LSVANPILMP TSSSSPFPVF SQPQTQPPQT HTVTFTPTPQ PPPMAPTFPG VAFSSHSSST  420
ASGMGSDDDE EDDMGVDQAN IAGSSSRKRK RGNHGGGKMM ELFEGLVRQV MQKQAAMQRS  480
FLEALEKREQ ERLDREEAWK RQQMSRLARE HEVMSQERAA SASRDAAIIS LIQKITGHTI  540
QLPPSLSSQT PQPPHQPPQP PPAAKRAQEP PLSTAQSQLQ QPIMAIPQQQ ILPHLPHQPE  600
QKQQQQQQQQ QQQEMMVSSE QSSLPSSSRW PKAEILALIN LRSGMEPRYQ DNVPKGLLWE  660
EISTSMKRMG YNRNAKRCKE KWENINKYYK KVKESNKKRP QDAKTCPYFH RLDLLYRNKV  720
LGGGGGTSTS SGLPQEQKQS PVSAVKPPQE GVVNVQPHGS AASSEELEPI EESPQGTEKP  780
EDLVMRELMQ QQQQQQQQQQ ESMIGEYEKI EESHNYNNME EEEEEMDEEE LDEDEKSAAF  840
EIAFQSPANR GGNGHTEPPF LTMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297305KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00177DAPTransfer from AT1G33240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g043180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210450.0AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270350.0AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032150.0AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461138.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
RefseqXP_019091258.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X2
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGXP_010461140.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.14e-97GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]