PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LSD

Protein Properties

Length: 155aa MW: 15820.4 Da PI: 7.9227

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g042550.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.1	1.6e-14	37	61	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C++V Csa14g042550.1 37 CSGCRNLLMYPAGASSVCCAVCNAV 61 ************************9 PP
2	zf-LSD1	44.2	3e-14	76	100	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV Csa14g042550.1 76 CAGCHTLLMYIRGATSVQCSCCHTV 100 ************************9 PP
3	zf-LSD1	41.7	1.9e-13	114	138	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Csa14g042550.1 114 CGNCRMLLMYQYGARSVKCAVCNFV 138 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.2E-14	34	64	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.5E-12	37	61	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	3.07E-5	37	135	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	5.2E-14	73	102	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	76	100	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.4E-12	111	141	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-12	114	138	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MPVPLAPYPT PPAPAMAPSY TPPPAHGSTS GQSQLVCSGC RNLLMYPAGA SSVCCAVCNA 60 VTAVPPPGTE MAQLVCAGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCRML 120 LMYQYGARSV KCAVCNFVTS VGASASTSDA KFNS*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g042550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY057675	1e-158	AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBank	AY116951	1e-158	AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBank	AY349618	1e-158	AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461077.1	1e-107	PREDICTED: protein LOL1
Refseq	XP_010461078.1	1e-107	PREDICTED: protein LOL1
Swissprot	Q93ZB1	4e-87	LOL1_ARATH; Protein LOL1
TrEMBL	R0IDJ3	2e-94	R0IDJ3_9BRAS; Uncharacterized protein
STRING	XP_010461077.1	1e-106	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7293	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	3e-67	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]