PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 497aa    MW: 55166.2 Da    PI: 4.4887
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35511432103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws+n+nsf+v+d+  fa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  Csa14g042270.1  51 FLSKTYDMVDDPTTDSIVSWSANNNSFIVWDPPLFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 136
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+ks+
  Csa14g042270.1 137 ITRRKSA 143
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3845135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-3547140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-6247140IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-195174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDGGGSSKVS ISDGGGGGGG SVTVESMEIK PSPLPQPQPA AILSSTAPPP FLSKTYDMVD  60
DPTTDSIVSW SANNNSFIVW DPPLFARDLL PKNFKHNNFS SFVRQLNTYG FRKVDPDRWE  120
FANEGFLRGQ KHLLKTITRR KSAQGHGHQQ SQHSNGQNAS VSACVEVGKF GLEEEVERLK  180
RDKNVLMQEL VRLRQQQQST DNQLQTMVQR LQGMENRQQQ LMSFLAKAVQ SPHFLSQFLQ  240
QQNQQNESSR RISDTNKKRR FKRDGIVGNN DSASPDGQIV KYQPPMHEQA KAMFKQLMKM  300
EPYKTGDDGF LLGNGTSTTE GTEMDTSSNH ASGITLQEMP TASDIQSPSP IGTTPENVSA  360
QPEATENCIP SPDGLTLPEF SHMLPEINAE KPPEDFMEPN IGDSSPFLDP DLLIDDSLSF  420
DIDDFPMDPD IEPVDYSLLE DLLMSSTVSD NMDFTPVDNE TEQKQNGWEK TQHMDNLTQQ  480
MGLLSPETID PSRQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-254914027129Heat shock factor protein 1
5d5v_B4e-254914027129Heat shock factor protein 1
5d5v_D4e-254914027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262NKKRRFKR
2256261KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461051.10.0PREDICTED: heat stress transcription factor A-1d-like
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLR0GW980.0R0GW98_9BRAS; Uncharacterized protein
STRINGXP_010461051.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]