PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 484aa    MW: 51481 Da    PI: 6.7364
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.13.4e-22387449163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +e+
  Csa14g042060.1 387 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELVAEN 449
                     89********************************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.1E-2593201IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.9E-40240360No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-16382445No hitNo description
PfamPF001703.8E-20387449IPR004827Basic-leucine zipper domain
SMARTSM003384.3E-21387451IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.036389452IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-11390446No hitNo description
CDDcd147026.19E-24392442No hitNo description
PROSITE patternPS000360394409IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
GHAASSSSSS PSENTTRPIT EKTLNILSFD SLKSHYQFLQ IFFCFISRIW VLLRLIKHCR  60
SPGFVRFENL FWFLCEEAFT GWLEVGECDQ GLMGSSEMEK SGKEKEPKTP PPSSSSSAPA  120
AAAATSQEPP SSAVSAGMAT QDWSGFQGFS PMPPHGYVAS SPQPHPYMWG VQHMMPPYGT  180
PPHPYVAMYP PGGMYAHPSL PPGSYPYSPY AMPSPNGMAE ASGNTGSGLE GDGKPSDGKE  240
KLPIKRSKGS LGSLNMIIGK NNETGKNSGA SANGACSKSA ESASDGSSDG SDANSQNDSG  300
SRHNGKDGET ASESGGSAHG PLRNGSNLLV SQAVAIMPVS ATGVPGPPTN LNIGMDYWSG  360
HGNVPGAVPG VVVDGSQSQP WLQVCDEREL KRQRRKQSNR ESARRSRLRK QAECDELAQR  420
AEVLNGENSS LRAEINKLKS QYEELVAENS SLKNKFSSVP SLEGGELNKN EQEPQRGARQ  480
DVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403409RRSRLRK
2403410RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0041470.0BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461032.10.0PREDICTED: bZIP transcription factor 68-like
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLD7KHG30.0D7KHG3_ARALL; Uncharacterized protein
STRINGXP_010461032.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]