PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g039320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 683aa    MW: 75403.3 Da    PI: 9.8575
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g039320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.67e-1819107273
        trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+++Liea++ ++er  r++                  ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  Csa14g039320.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpppeqqqdsrssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 107
                     **************6666666554455555556666666558999****************************************9843 PP
2trihelix56.67e-18292380273
        trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+++Liea++ ++er  r++                  ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  Csa14g039320.1 292 WTLNETMVLIEAKKMDDERRMRRSiglpppeqqqdsrssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 380
                     **************6666666554455555556666666558999****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8061192IPR017877Myb-like domain
PfamPF138373.8E-1318107No hitNo description
PROSITE profilePS500906.806284365IPR017877Myb-like domain
PfamPF138373.8E-13291380No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSNKP  60
AELRWKWIED YCWRKGCMRS QNQCNDKWDN LMRDYKKVRE YERRRVESSF TAAESSSSSA  120
AAAAASAGDT PSYWKMEKSE RKERNLPSNM LPQTYQALFE VVENKTLPSS TAATAVTAAV  180
AAAIGSGNGS GGGQLQKVLQ QQGLGFVVPK VHQIIHQPPP PPAAVIVSLP PPPSQPPPLQ  240
PLPRPLLLPP PPPPSFHAQP ILPTVDYFKK KKNMADQSGG LVMMREYRKG NWTLNETMVL  300
IEAKKMDDER RMRRSIGLPP PEQQQDSRSS NKPAELRWKW IEDYCWRKGC MRSQNQCNDK  360
WDNLMRDYKK VREYERRRVE SSFTAAESSS SSAAAAAASA GDTPSYWKME KSERKERNLP  420
SNMLPQTYQA LFEVVENKTL PSSTAATAVT AAVAAAIGSG NGSGGGQLQK VLQQQGLGFV  480
VPKVHQIIHQ PPPPPAAVIV SLPPPPSQPP PLQPLPRPLL LPPPPPPSFH AQPILPTVAN  540
KDSSSSDSDT SEYSDTSPAK RRRTMPTTTA GPSGGGVEAE EARRSKRDEE ETTVAAALSR  600
SVTVIANAIR ESEERQDRRH KEVMSVQERR LKMEESSVEM NREGMDGLVE AINKLASSIF  660
ALASSSSSSS ARHNNQHQGG PP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g039320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293841e-149AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19.
GenBankBT0153171e-149BT015317.1 Arabidopsis thaliana At1g31310 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460957.10.0PREDICTED: amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like isoform X1
TrEMBLR0GU311e-179R0GU31_9BRAS; Uncharacterized protein
STRINGXP_010460957.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.18e-75Trihelix family protein