PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g036020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 394aa MW: 44697.8 Da PI: 4.8372

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g036020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	13	105	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ + ++s+ +v+p ++ +h ++ +k+++l+ + grsW+v +r++++++ +++GW +Fv++n L++gDf++F ++g++ f v+ Csa14g036020.1 13 FFKVF--VSLFSSDSMVIPIPYD-DH-LPRLLPKKVILQGPGGRSWNVATEIRGGGDEVHFAQGWPKFVEDNTLNDGDFLTFVYNGNHIF--EVS 101 88999..89999*******96.66.44568899***********99*******************************99999..999 PP EE-S CS B3 96 vfrk 99 +fr+ Csa14g036020.1 102 IFRS 105 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	6.21E-19	11	104	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-20	11	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.663	11	106	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.06E-22	11	108	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.8E-19	13	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-16	13	105	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MAAATEFQFP PRFFKVFVSL FSSDSMVIPI PYDDHLPRLL PKKVILQGPG GRSWNVATEI 60 RGGGDEVHFA QGWPKFVEDN TLNDGDFLTF VYNGNHIFEV SIFRSDGCKE TSEVFEVSED 120 EGDSVCSLSS DNTETRSKPE MENPIPQGTD KGKSKVELVE DSDEDEDSVY SESSEETETE 180 SDSGSEFRIG KTTPKRKNKG KKKDQEVVPV EEESSEEDGD GDSDSDYIEA FGQLAVEDES 240 NSEDSSYAPE EEDTAASTTC VKAKVANLKR KDAAKKRKKV DPKIKNPETY LDDPKNIHFE 300 TNVKNRLYEL LVHAQLVKDY CLRFGDYVDY IDRFGKLRAK TAKWKDQRVC IKRWMRICKR 360 NRLTKEDRVL CELLRRGSFV YAIKLHVVRG KNL*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MAAATEFQFP PRFFKVFVSL FSSDSMVIPI PYDDHLPRLL PKKVILQGPG GRSWNVATEI  60
RGGGDEVHFA QGWPKFVEDN TLNDGDFLTF VYNGNHIFEV SIFRSDGCKE TSEVFEVSED  120
EGDSVCSLSS DNTETRSKPE MENPIPQGTD KGKSKVELVE DSDEDEDSVY SESSEETETE  180
SDSGSEFRIG KTTPKRKNKG KKKDQEVVPV EEESSEEDGD GDSDSDYIEA FGQLAVEDES  240
NSEDSSYAPE EEDTAASTTC VKAKVANLKR KDAAKKRKKV DPKIKNPETY LDDPKNIHFE  300
TNVKNRLYEL LVHAQLVKDY CLRFGDYVDY IDRFGKLRAK TAKWKDQRVC IKRWMRICKR  360
NRLTKEDRVL CELLRRGSFV YAIKLHVVRG KNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	1e-13	12	108	10	104	At1g16640
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	203	RKNKGKKKD
2	274	278	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g036020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493717	1e-116	AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460626.1	0.0	PREDICTED: B3 domain-containing protein At4g34400-like
Swissprot	Q9SZ05	1e-166	Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBL	R0F894	0.0	R0F894_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010460626.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6555	16	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34400.1	1e-150	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Richter R, et al. Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications. PLoS Genet., 2019. 15(4): p. e1008065 [PMID:30946745]