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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g034910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | SBP | ||||||||
Protein Properties | Length: 316aa MW: 35613.8 Da PI: 8.7887 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.7e-40 | 176 | 252 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gC+ dls+ak+yhr+h+vCe+hsk+p+v+vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q Csa14g034910.1 176 RCQIDGCDLDLSSAKDYHRKHRVCEKHSKCPKVTVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 252 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.0E-33 | 170 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.402 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.2E-37 | 175 | 253 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-31 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDCNMVSPFQ WDWENLIMSN PSRTENDSKQ LSTDWETEKG DGIESIVPDF LGFERVSSGS 60 ATSFWHTAVS KSSQSTSTNS SSPNVKRCKP PASESSPGDS CNNIDFVQVK ASTALEASVA 120 SAESDLCLKL GKRTYSEEFW GRNNNDIPAV SVKLLTPSVV ARKKSKSCVQ SMQVPRCQID 180 GCDLDLSSAK DYHRKHRVCE KHSKCPKVTV SGLERRFCQQ CSRFHAVSEF DEKKRSCRKR 240 LSHHNARRRK PQGVFSMNPE RVYDRRQQTN MLWKGLSLNT RSEDLYEWGS TYDTKPTQME 300 SGFTLSFQRG AVGYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-27 | 177 | 250 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 249 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g034910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011635 | 0.0 | AJ011635.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 11. | |||
GenBank | AY070106 | 0.0 | AY070106.1 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds. | |||
GenBank | AY088185 | 0.0 | AY088185.1 Arabidopsis thaliana clone 42666 mRNA, complete sequence. | |||
GenBank | AY091286 | 0.0 | AY091286.1 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499210.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_010499211.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_010499212.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_010499213.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Swissprot | Q9FZK0 | 0.0 | SPL11_ARATH; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | R0GPQ0 | 0.0 | R0GPQ0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010499209.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5004 | 16 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27360.4 | 0.0 | squamosa promoter-like 11 |
Publications ? help Back to Top | |||
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