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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa14g033960.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
CO-like |
Protein Properties |
Length: 420aa MW: 46958.6 Da PI: 4.8782 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa14g033960.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 26.3 | 1.6e-08 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C ++ +lC++C + H+ H++v
Csa14g033960.1 13 ARACDSCVKRRARWYCAADDAFLCQSCDSLVHSAnplarrHERV 56
578*****************************657888888876 PP
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2 | CCT | 67.5 | 3.7e-23 | 361 | 404 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
Csa14g033960.1 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 404
9*****************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MKSLANAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD SLVHSANPLA RRHERVRLKT 60 ASPAAVKHSN HSSSASPPHE AATWHHGFTR KARTPRGSGK KNNLSIFHDL VPEISVEDQT 120 DSYELEEQLI CQVPVLDPLV AEQFLNDVVA PKIEFPMISV MIDEDEDNAE SCLNGFFPTD 180 MELEEFAADV ETLLGRGLDT ESYAMEDLGF SNTEMFKVEK DEIEEEEVEE KKAINMEIFD 240 DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEEK NVLMLRLNYD 300 SVISTWGGQG PPWTSGEPPK LDIDISSWPP VSMGEFGGDQ SHQKQYVGGC LPSSGFGDGG 360 REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRAALTAAA ANSPLGVNY*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 371 | 387 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK226436 | 0.0 | AK226436.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-11-K13. |