PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g026360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 448aa    MW: 51260.6 Da    PI: 6.48
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g026360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.8e-27121215185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+++v++Li+a+++++++++ ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  Csa14g026360.1 121 KWTDKMVKLLITAVSYIGDDSSMDSgsrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 215
                     7**************9888888665556778888**********************************************669999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-24119242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDTNFPQGGV VRGGASSSYG GFDLQGGSMR VHHQDSMNQH RHNPNSRPLH EGLPFTMVTG  60
QTCDHHHHQN MSLTDQHKGE RDKNSVSDDD EPSFTEEGGG VDGHNNEANK STKGSPWQRV  120
KWTDKMVKLL ITAVSYIGDD SSMDSGSRRK FAVLQKKGKW KSVSKVMAER GYHVSPQQCE  180
DKFNDLNKRY KKLNDMLGRG TSCQVVENPA LLDSIGYLND KEKDDVRKIM SSKHLFYEEM  240
CSYHNGNRLH LPHDLALQRS LQLALRNRDD HDNEESRKHQ MEDLDDEDHD GEGDEHDEYE  300
EQHYSHGDCR GIHYGGGGGG PLKKIRQSHS HEDADHPSHV NSLECNKGNL PQMPFSQGDV  360
NQGGVESGRA ASMQKQWMES RTLQLEEQKL QIQVELLELE KQRFRWQRIS KKRDQELERM  420
RMENERMKLE NDRMGLELKQ RELGVEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g026360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458500.0AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913780.0AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F40.0AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459826.10.0PREDICTED: uncharacterized protein LOC104740815
TrEMBLR0GX820.0R0GX82_9BRAS; Uncharacterized protein
STRINGXP_010459826.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors