PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g025140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 438aa    MW: 47696.9 Da    PI: 4.7846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g025140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-06385407426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f  t  C++G++C + H+
  Csa14g025140.1 385 KPCMYFNSTRGCRHGANCLYQHD 407
                     69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.098381409IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4385408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.22E-5386425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLLFADGKYF GKIAWRWIRC PANFINGKGE EEDATESNIT VFQVRLFISE DSPSQVGSES  60
QDHLQAKSSL ASHPGDDNLP PGFGGPLSAN EPQIRLSDIA VIKWKCSVRI LLDEEWRVVA  120
GDESKEVEAQ NQRELRVLEA FYPGASSIPS NPSVPADVEN SHYDDQQTIV IPILPVEDDD  180
IATDSASDLP TQSGTSVGTE PSIPNQNIST SSILPSGSDI MAALSAISNC KEQGSMIDQD  240
LLIKILSNPK LVENLVANSS SAGSVSSNAS GLYPSSTHEA NGAVTTTPAS NGQFYPQPMV  300
TQCPPMVYPP PAPSDQHNYG APPARDASYY KNLIQQHGGE RQETPPVQPH LGFRYNLPPG  360
GPNQEMINSN NNNQRPRDSK PKIMKPCMYF NSTRGCRHGA NCLYQHDATP YQPRNLNNGN  420
INTSEMQSAK RMRFDRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g025140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankAY0889590.0AY088959.1 Arabidopsis thaliana clone 111757 mRNA, complete sequence.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090751.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLR0IPE40.0R0IPE4_9BRAS; Uncharacterized protein
STRINGXP_010459663.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]