PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

AP2

Protein Properties

Length: 341aa MW: 38525.7 Da PI: 5.2178

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g020190.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.6	1.1e-11	53	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d s+n ++k+ + g ++ ++ Aa+a++ a++k++g Csa14g020190.1 53 SVHRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEDAAARAYDLAALKYWG 109 689****************88889998888888*99***********98 PP
2	AP2	51	3.5e-16	152	203	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Csa14g020190.1 152 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 203 89**************99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.17E-14	53	118	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.8E-11	54	117	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-17	54	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.426	54	117	IPR001471	AP2/ERF domain
Pfam	PF00847	4.3E-8	54	109	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-5	55	66	IPR001471	AP2/ERF domain
CDD	cd00018	1.40E-14	152	213	No hit	No description
SuperFamily	SSF54171	2.16E-17	152	213	IPR016177	DNA-binding domain
Pfam	PF00847	3.8E-11	152	203	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.859	153	211	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.8E-17	153	211	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-25	153	217	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-5	193	213	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MYIAVEVSPV MEEITQKSKK TSVEIDESAG PVVIKAKRKR RSQPREAPPQ RSSVHRGVTR 60 HRWTGRYEAH LWDKNSWNET QTKKGRQGAY DEEDAAARAY DLAALKYWGR DTILNFPLCN 120 YEEDIEEMES QSKEEYIGSL RRKSSGFSRG VSKYRGVAKH HHNGRWEARI GRVFGNKYLY 180 LGTYATQEEA AIAYDIAAIE YRGLNAVTNF DISRYLKLPA PENLTDAANQ PLEEIPQSDL 240 SPFINPTNHE SELSQSQSSS EDNDDRKTKL LKSSPLNAEE VIGPSTPPEI VPPRRSFPED 300 IQTYFGCQNS GKLTTEEDDV IFGGLDSFLT PDFYSELDGC *

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g020190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045915	0.0	AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBank	AY133880	0.0	AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459145.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	0.0	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	R0GSI4	0.0	R0GSI4_9BRAS; Uncharacterized protein
STRING	XP_010459145.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM553	27	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	0.0	ARIA-interacting double AP2 domain protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]