PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g017640.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 507aa MW: 53539.4 Da PI: 9.8098

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g017640.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	120	140	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Csa14g017640.1 120 CEVCNKGFQREQNLQLHRRGH 140 *******************88 PP
2	zf-C2H2	14.1	0.00014	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Csa14g017640.1 194 FKCEKCSKRYAVQSDWKAHSKTC 216 89*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.77E-7	117	140	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.6E-6	117	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.025	118	140	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	118	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	159	189	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-5	182	215	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.77E-7	189	214	No hit	No description
SMART	SM00355	88	194	214	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MSSSYNNSIA SSAAQSFLIS GARTGAGLGV GVGPVGAGAG VGVGVGVGGG RGVGAGAGAG 60 ARVGANNFNR DHEPAMIQQP NSSVAPPPKK RRNQPGNPNP DAEVIALSPR TIMATNRFLC 120 EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVRRKVYL CPEASCVHHD PARALGDLTG 180 IKKHYYRKHG EKKFKCEKCS KRYAVQSDWK AHSKTCGTKE YRCDCGTIFS RRDSYITHRA 240 FCDALIQESA RNPTVSFTAM SAAGGGGAGR HGFYGGAASS LSQNHFGSSS TSGFTPLAAA 300 GYNLNRSSPN KFEEFVPQSS NPNPGGPTNF LMQCATNQGL LAQNDQSLMN QHGLINLGDN 360 INSNNNHLFN LGYFQDTKNP DQTSVPSLFT SGADNNDPST LLRGLTSSSS SSVVVNDFGD 420 ADNGNFQGLM NSLAATTDHQ SRSGSIFDLH FGNNLSMGGS DRLTLDFLGV NGGIVSNVNG 480 RGGGRNGAPL GTEMKFSHPN HPFGKA*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MSSSYNNSIA SSAAQSFLIS GARTGAGLGV GVGPVGAGAG VGVGVGVGGG RGVGAGAGAG  60
ARVGANNFNR DHEPAMIQQP NSSVAPPPKK RRNQPGNPNP DAEVIALSPR TIMATNRFLC  120
EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVRRKVYL CPEASCVHHD PARALGDLTG  180
IKKHYYRKHG EKKFKCEKCS KRYAVQSDWK AHSKTCGTKE YRCDCGTIFS RRDSYITHRA  240
FCDALIQESA RNPTVSFTAM SAAGGGGAGR HGFYGGAASS LSQNHFGSSS TSGFTPLAAA  300
GYNLNRSSPN KFEEFVPQSS NPNPGGPTNF LMQCATNQGL LAQNDQSLMN QHGLINLGDN  360
INSNNNHLFN LGYFQDTKNP DQTSVPSLFT SGADNNDPST LLRGLTSSSS SSVVVNDFGD  420
ADNGNFQGLM NSLAATTDHQ SRSGSIFDLH FGNNLSMGGS DRLTLDFLGV NGGIVSNVNG  480
RGGGRNGAPL GTEMKFSHPN HPFGKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-33	190	256	3	69	Zinc finger protein JACKDAW
5b3h_F	6e-33	190	256	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g017640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091041	0.0	AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds.
GenBank	AY133766	0.0	AY133766.1 Arabidopsis thaliana clone U18944 putative zinc finger protein (At1g14580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010458962.1	0.0	PREDICTED: protein indeterminate-domain 6, chloroplastic-like isoform X2
Swissprot	Q8RWX7	0.0	IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBL	E4MXD6	0.0	E4MXD6_EUTHA; mRNA, clone: RTFL01-38-E19
TrEMBL	V4KCA7	0.0	V4KCA7_EUTSA; Uncharacterized protein
STRING	XP_010458962.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3678	17	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	0.0	C2H2-like zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]