PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 321aa MW: 36407.8 Da PI: 7.6368

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g017460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.4	3.1e-32	90	145	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHR+eve Csa14g017460.1 90 MIKYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRKEVEG 145 689***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.3E-28	91	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-31	91	154	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-31	92	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.436	93	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.42E-19	212	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-29	215	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.0E-27	222	278	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEIASQEDHD MPIPLNTTFG GGGNGSHGHM IHHHHELHAP NSAPPTHNNI TTQPPQMPLH 60 GNGHGNNYDH HHHQQDPHHV SYNAIIKKPM IKYKECLKNH AAAMGGNATD GCGEFMPSGE 120 DGSIEALTCS ACNCHRNFHR KEVEGEPAAT AMSPYHQQPH PPRKLMLNHH KIRSAMPHQM 180 IMPIGVSNYR YMHNNSESED FMEEDGITTA SRSLPHPPYN QKKRFRTKFT PEQKEKMLNF 240 AEKVGWKIQR QEDCVVQRFC EEIGVKRRVL KVWMHNNKLH FSKKNNNSNI NLEDNDNEKS 300 NNLNNVDLSA NNDIITKIVP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-23	223	278	18	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g017460.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493456	0.0	AB493456.1 Arabidopsis thaliana At1g14440 mRNA for hypothetical protein, partial cds, clone: RAAt1g14440.
GenBank	AY074266	0.0	AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBank	AY096738	0.0	AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F14L17	0.0	AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010458941.1	0.0	PREDICTED: zinc-finger homeodomain protein 4-like
Swissprot	Q9M9S0	0.0	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	D7KBK3	0.0	D7KBK3_ARALL; ATHB31
STRING	XP_010458941.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-161	homeobox protein 31