PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g016390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 375aa    MW: 43087.9 Da    PI: 6.9078
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g016390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.51.3e-2697178286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rr m+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k +++++    s +++y++++e
  Csa14g016390.1  97 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRGN---GSAKMSYYKEIE 178
                     ********************************************************************84...566899***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-487158IPR009057Homeodomain-like
PROSITE profilePS500908.02689153IPR017877Myb-like domain
SMARTSM007170.006293155IPR001005SANT/Myb domain
CDDcd122034.41E-2995160No hitNo description
PfamPF138374.6E-2096179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MFISDKSRPT DYYEDDNPNS STATTRDMMI DVTTTTTTSE AVSDLQPHHH NNHQNHNHHH  60
HHRHLNQSQQ QPQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR GMDGLFNTSK  120
SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK YHDRGNGSAK MSYYKEIEDI  180
LRERSKKVTV TTQFNKSPST PPPPTTAKVD SFMQFSDKGF DDTSISFGSV EGGDGHGQPF  240
GGRVITVKLG DYTRRIGVDG SAEAIKEAIR AAFGLRTRRA FWLEDEDQIV RCLDRDMPLG  300
NYLLHLDDGL AIRVCHYDES NQLPVHSEEK IFYTEEDYRD FLARRGWTCL QVDGFRNIEN  360
MDDLQPGAVY RGVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A5e-5691176186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g016390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0119790.0BT011979.1 Arabidopsis thaliana At1g13450 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458795.10.0PREDICTED: trihelix transcription factor GT-1 isoform X2
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLR0IPF90.0R0IPF9_9BRAS; Uncharacterized protein
STRINGXP_010458794.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.20.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]