PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g015540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 158aa    MW: 17207.5 Da    PI: 10.4976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g015540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-171362155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+ +l+g
  Csa14g015540.1 13 PVYRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDVAAMALKG 62
                    68****9.55.6*********854...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-101362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-281472IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-181472IPR016177DNA-binding domain
SMARTSM003802.7E-291476IPR001471AP2/ERF domain
PROSITE profilePS5103220.2441470IPR001471AP2/ERF domain
CDDcd000182.25E-181572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSASGLASRK KDPVYRGIRC RSGKWVSEIR EPKKTTRIWL GTYPTAEMAA AAYDVAAMAL  60
KGREAVLNFP ESARSYPVPV STSAADIRTA AAAAALDADH KRSSKTTQKI IKLGENIQTS  120
HMKSQEETDH DLGFRLASYD QIRKTAPKQN RPASSQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1315701572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g015540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462671.12e-62PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ38Q392e-38ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLA0A1J3JDP03e-42A0A1J3JDP0_NOCCA; Uncharacterized protein
STRINGXP_010462671.18e-62(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.11e-36ERF family protein