PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa14g014260.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 383aa MW: 42118.9 Da PI: 5.2059

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g014260.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	134.8	2.9e-42	153	248	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +fqr+w+e+Dei++LqGl+d+k++tg+sp+dd++++y+ vkks+sf+vsk q++eK+r+LKkK++++v kak+g+epsf+k+hd+k+fe+sk +W Csa14g014260.1 153 YFQRVWTEDDEIAVLQGLMDYKNDTGVSPYDDTNGVYQLVKKSVSFDVSKIQFMEKLRSLKKKYENNVGKAKNGEEPSFAKPHDRKTFEFSKLVW 247 79********************************************************************************************* PP DUF573 97 g 97 g Csa14g014260.1 248 G 248 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.8E-34	154	248	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MSSKRFNPLE DPPSASSSDD DEVDASLEEG DEIVGNSSSD EEYDDDDGLP SAPPMKNVLF 60 LPAATGKLVS DSESVSGEET ESDSEPRKKK DQFLTVKHVM TETKDSVVKD QDSKKVKTSE 120 KSVGKRSRQT DEGGVSSTKR VKKSGGEETK KTYFQRVWTE DDEIAVLQGL MDYKNDTGVS 180 PYDDTNGVYQ LVKKSVSFDV SKIQFMEKLR SLKKKYENNV GKAKNGEEPS FAKPHDRKTF 240 EFSKLVWGAN GMALDSVVKP NGKSKKSSKS KKVESVKQVI DSSLPNGKNS EDEVTNKGGV 300 SLLGVAEMDV FAKSSLVKSL ARVGVDELAA DQGLSLLASE DKKRIEEQWR ALQVREFEFH 360 SQKSGFIHEV VTKIGEAFRS NV*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MSSKRFNPLE DPPSASSSDD DEVDASLEEG DEIVGNSSSD EEYDDDDGLP SAPPMKNVLF  60
LPAATGKLVS DSESVSGEET ESDSEPRKKK DQFLTVKHVM TETKDSVVKD QDSKKVKTSE  120
KSVGKRSRQT DEGGVSSTKR VKKSGGEETK KTYFQRVWTE DDEIAVLQGL MDYKNDTGVS  180
PYDDTNGVYQ LVKKSVSFDV SKIQFMEKLR SLKKKYENNV GKAKNGEEPS FAKPHDRKTF  240
EFSKLVWGAN GMALDSVVKP NGKSKKSSKS KKVESVKQVI DSSLPNGKNS EDEVTNKGGV  300
SLLGVAEMDV FAKSSLVKSL ARVGVDELAA DQGLSLLASE DKKRIEEQWR ALQVREFEFH  360
SQKSGFIHEV VTKIGEAFRS NV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g014260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010458551.1	0.0	PREDICTED: probable transcription factor At1g11510
Swissprot	C0SUU6	1e-117	STKLA_ARATH; Probable transcription factor At1g11510
TrEMBL	R0I1M2	1e-156	R0I1M2_9BRAS; Uncharacterized protein
STRING	XP_010458551.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	6e-99	DNA-binding storekeeper protein-related transcriptional regulator