PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g014260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 383aa MW: 42118.9 Da PI: 5.2059 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 134.8 | 2.9e-42 | 153 | 248 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +fqr+w+e+Dei++LqGl+d+k++tg+sp+dd++++y+ vkks+sf+vsk q++eK+r+LKkK++++v kak+g+epsf+k+hd+k+fe+sk +W Csa14g014260.1 153 YFQRVWTEDDEIAVLQGLMDYKNDTGVSPYDDTNGVYQLVKKSVSFDVSKIQFMEKLRSLKKKYENNVGKAKNGEEPSFAKPHDRKTFEFSKLVW 247 79********************************************************************************************* PP DUF573 97 g 97 g Csa14g014260.1 248 G 248 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.8E-34 | 154 | 248 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MSSKRFNPLE DPPSASSSDD DEVDASLEEG DEIVGNSSSD EEYDDDDGLP SAPPMKNVLF 60 LPAATGKLVS DSESVSGEET ESDSEPRKKK DQFLTVKHVM TETKDSVVKD QDSKKVKTSE 120 KSVGKRSRQT DEGGVSSTKR VKKSGGEETK KTYFQRVWTE DDEIAVLQGL MDYKNDTGVS 180 PYDDTNGVYQ LVKKSVSFDV SKIQFMEKLR SLKKKYENNV GKAKNGEEPS FAKPHDRKTF 240 EFSKLVWGAN GMALDSVVKP NGKSKKSSKS KKVESVKQVI DSSLPNGKNS EDEVTNKGGV 300 SLLGVAEMDV FAKSSLVKSL ARVGVDELAA DQGLSLLASE DKKRIEEQWR ALQVREFEFH 360 SQKSGFIHEV VTKIGEAFRS NV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g014260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010458551.1 | 0.0 | PREDICTED: probable transcription factor At1g11510 | ||||
Swissprot | C0SUU6 | 1e-117 | STKLA_ARATH; Probable transcription factor At1g11510 | ||||
TrEMBL | R0I1M2 | 1e-156 | R0I1M2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010458551.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 6e-99 | DNA-binding storekeeper protein-related transcriptional regulator |