PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g012210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 444aa    MW: 50186.6 Da    PI: 7.0626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g012210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12265306854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er+RRd+iN+a+  Lr ++Pk      +K++K+ i + Av+YI++L
  Csa14g012210.1 265 SERKRRDKINQAMYALRAVVPKI-----TKMNKIGIFTDAVDYINEL 306
                     6*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-1511157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.14E-11255304No hitNo description
SuperFamilySSF474591.44E-14256320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.869257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14260323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9264306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMMRGGERVK EFLRPFVDSK TWDFCVIWKL GDDPSRFIEW VGCCCSGGYV DKNIKLETAE  60
GTERKQKAFF CRDEHNKHRI RTLACEALSH FPLFMPLYPG IHGEVVMSKS PKWLVNSGPG  120
SEKDIFNTRV LVPVSDGLVE LFSFKMKPFD ETIVDMIVSR CNAVSEPFPE QRLQFRITPG  180
AEESMSSGVN LSFEGGGSSS VSNHSSETQN RFGNHPNAHC GELHKEEQAP CLVMNKEDPV  240
VQNAMDCQAN KRLPKEHFKS KNLLSERKRR DKINQAMYAL RAVVPKITKM NKIGIFTDAV  300
DYINELLLEK KKLEDELKGI NEKEDKEIAA EEESAIADPE AEKLSSKLNK KMKKNEVNLE  360
AYEIGERDFL IRVGQEHKRG GFKRLIEAVD SCGLEIINVN FTKHDLTAMT VLNVKANKDG  420
IASGDLRDSL LKMMMNQTID MKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270ERKRRD
2266271RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g012210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293750.0AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458419.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_010458420.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLR0GTT20.0R0GTT2_9BRAS; Uncharacterized protein
STRINGXP_010458419.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein