PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g011140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 653aa    MW: 69768.1 Da    PI: 9.8418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g011140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-09248292144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W+ eEde l  av++ G g+W+tI r       Rt+ q+  rw
   Csa14g011140.1 248 RKKWSVEEDEELFAAVRRCGEGNWATIIRgdFR-GDRTASQLSQRW 292
                      789***********************9662134.488888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.179243300IPR017930Myb domain
SuperFamilySSF466891.08E-11245298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-11245295IPR009057Homeodomain-like
SMARTSM007175.7E-9247298IPR001005SANT/Myb domain
PfamPF002493.1E-6248292IPR001005SANT/Myb domain
CDDcd116601.30E-13249297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
FATRASNTVV TNPILRSSSS VFFFFLVKFD SFDTVLKTKA INFSVFINTT MVKSSIINSR  60
KRFITEGDIA TLLHRYDTKT ILRMLQEMAY YSELKMDWNE LVKKTTTGIT NAREYQLLWR  120
HLSYREPLLP VEDDAQPLDD DSDLECELEP SPAVSHEASV EAIAHVKVLA ASYVPSESDI  180
LNDTVEAPLT INVPYVLPEG TQEPSESPWS SRGMNITFPV CLQKATSTTE GMNGNGSASS  240
SMAFRRKRKK WSVEEDEELF AAVRRCGEGN WATIIRGDFR GDRTASQLSQ RWALIRKRGD  300
TSTSVRQSGV QRTNEQIAVN HALSLALGNR LPTKKLLVGI STKTSSRGIT ETQANGACSS  360
QGQQQSKPVV QALPGTATSK SRVVRKTTAS SISRLDVMAT ANSVAVAACV GGVSTAASVP  420
KVEPGKTDSP WPSCSLSVPK VEPGTSVTAS SIIKAVGPTN TLPLANGKLK PVAASPSSRK  480
RPLMDPRSEG STMLSASAPL PSESRIVSNQ RVFAATVLQP EPSAETVTCK PDGGQKEEAR  540
GNGASSPAAI QPNQMTSTNS EICRGKQATQ AQSPNLLPRK IPVVKTAIHG ATNQKLVNKQ  600
SDKTVIPSIS GACSQSQAKC EVNNKVGPAI KGSSVCGKPA EVATMAGTGQ GV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245249RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g011140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458269.10.0PREDICTED: uncharacterized protein LOC104739567
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGXP_010458268.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein