PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g008240.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 395aa MW: 43863 Da PI: 6.518

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g008240.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.3e-10	205	260	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l Csa14g008240.1 205 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 260 9*****************************************99988877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-15	201	265	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	203	266	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.7E-10	205	260	No hit	No description
SuperFamily	SSF57959	2.04E-10	205	256	No hit	No description
Pfam	PF00170	1.7E-8	205	259	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.87E-23	206	255	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
IVSLSLSLSF LRRSSFHFIE RESFHLHHSL SPLCIVLSPN ILIIRFNFHF LGFQNSKMEK 60 SSDSKFSDPI PLPNNPNADP IPPSSFHRRS RSDDMSMFMF MDPLSSGAPP SSDDLPSDDD 120 LFSSFIDVDS LTSNPNPFPN QSLSSNSASG ANPNPPPPPQ SSSRPRHRHS NSVDAGCAMY 180 AGEIMDAKKA MPPEKLSELW NIDPKRAKRI LANRQSAARS KERKARYIQE LERKVQSLQT 240 EATTLSAQLT LYQRDTNGLA NENTELKLRL QAMEQQAQLR NALNEALRKE VERMKMETGE 300 ISGNSDSFDM GMQQIQYSSS TFMAIPPYHG SMNGQDMQQM HTSFNNPMEM SNSQSVSDFL 360 QNGRLQGLEI SSNSSSLVKS EGPSLSASES SSAY*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

IVSLSLSLSF LRRSSFHFIE RESFHLHHSL SPLCIVLSPN ILIIRFNFHF LGFQNSKMEK  60
SSDSKFSDPI PLPNNPNADP IPPSSFHRRS RSDDMSMFMF MDPLSSGAPP SSDDLPSDDD  120
LFSSFIDVDS LTSNPNPFPN QSLSSNSASG ANPNPPPPPQ SSSRPRHRHS NSVDAGCAMY  180
AGEIMDAKKA MPPEKLSELW NIDPKRAKRI LANRQSAARS KERKARYIQE LERKVQSLQT  240
EATTLSAQLT LYQRDTNGLA NENTELKLRL QAMEQQAQLR NALNEALRKE VERMKMETGE  300
ISGNSDSFDM GMQQIQYSSS TFMAIPPYHG SMNGQDMQQM HTSFNNPMEM SNSQSVSDFL  360
QNGRLQGLEI SSNSSSLVKS EGPSLSASES SSAY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g008240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419852	0.0	AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AY062474	0.0	AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBank	BT000102	0.0	BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457837.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	Q6S4P4	4e-80	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	R0IIC0	0.0	R0IIC0_9BRAS; Uncharacterized protein
STRING	XP_010457837.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13555	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-136	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]