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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g004860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 399aa MW: 44053 Da PI: 8.1463 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.7e-11 | 130 | 153 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+r+G C++Gd C FaHg Csa14g004860.1 130 GEVCPEFRRGGDCSRGDDCEFAHG 153 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.535 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 127 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 131 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 131 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5 | 163 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDVVCTEHQM RKPTVEIPPR KLLLSSKSFP AADSSSPRSP RKHNWNKSNK ITSEHEEDSF 60 NNEDNNNKEI KEYCYDSDSD DPYASDHFRM FEFKIRRCTR SRSHDWTDCP FAHPGEKARR 120 RDPRRFQYSG EVCPEFRRGG DCSRGDDCEF AHGVFECWLH PIRYRTEACK DGKHCKRKVC 180 FFAHSPRQLR VLPPENVSGG SGSPSPAAKN PCCLFCSSSP TSTLLGNLSH LSRSPSLSPP 240 MSPAHKAAAF SRLRNRAASA VSAAAAAGSV NYKDVLSELV NSLDSMSLAE ALQVTSSSPV 300 TTPVSAAAAA FASSCGLSNQ RLHLQQQQPS SPLQFALSPS TPSYLTNSPR ANFFGDDFTP 360 RRRQMNDFST VAAVREKTSF EDGSCGDPDL GWVNDLLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g004860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003027 | 0.0 | AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457395.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9ZWA1 | 0.0 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | V4MW89 | 0.0 | V4MW89_EUTSA; Uncharacterized protein | ||||
STRING | XP_010457395.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-170 | C3H family protein |
Publications ? help Back to Top | |||
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