PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g001790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 345aa    MW: 38858 Da    PI: 6.9305
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g001790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-12206231126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF H+
  Csa14g001790.1 206 YQPDICKDYKETGYCGYGDSCKFLHD 231
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9204237IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8205232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009205233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13206236IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9206231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-13269323IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.4E-8281323No hitNo description
SuperFamilySSF578502.15E-13281324No hitNo description
PROSITE profilePS5008910.63282320IPR001841Zinc finger, RING-type
SMARTSM001849.2E-5282319IPR001841Zinc finger, RING-type
CDDcd001623.71E-9282323No hitNo description
PROSITE patternPS005180297306IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSDSGEPKPS QQEDESQPQP QPQPAGQESQ SQQVCTFFKK PTKAKNIRKR TVDADEEDGD  60
SKSHTSILQN LKKVAKPDSK LFFSSGPSKS STTTSEAPEK PVFHYDSSKE IQVQNDSRAT  120
ATLETETDFN QDARAIRERV LKKADESLKG NKKKASDEKL YTGIHGYTDH KAGFRREQTI  180
SSEKAGGSHG PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFLH DRGDYKPGWQ  240
IEKEWEEAEK VRKRNKAMGV EDEDDEAGND SDEDDDALPF ACFICREPFV DPVVTKCKHY  300
FCEHCALKHH TKNKKCFVCN QPTMGIFNAA HEIKKRMAEE RSKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-663334213322RING finger protein 113A
5z58_M3e-663334213322RING finger protein 113A
6ff4_t3e-663334213322RING finger protein 113A
6ff7_t3e-663334213322RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g001790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457136.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_010457137.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_010457136.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein