PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g055780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 311aa MW: 35336.3 Da PI: 7.0875 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 91.5 | 6.4e-29 | 36 | 120 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kvltpsdv+k++rlv+pk++ae++ + +++++ l ++d+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F+ Csa13g055780.1 36 FDKVLTPSDVGKLNRLVIPKQHAENYfplED-NQNGIFLDFQDRLGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLTSGDTVSFH 120 89*********************999**743.457899***********************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-37 | 30 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-29 | 34 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.68E-26 | 34 | 121 | No hit | No description |
PROSITE profile | PS50863 | 13.888 | 36 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-20 | 36 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-25 | 36 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MNISTTNPDQ ELTEIGATGS GTNNYFFNSE MREHMFDKVL TPSDVGKLNR LVIPKQHAEN 60 YFPLEDNQNG IFLDFQDRLG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LTSGDTVSFH 120 RGYIPDDNAP ERRLQIVLID WSHKAERNQH GLSFGSYPTV TFYPAPEYSM PSHRSFHPFH 180 HNQYQERESP VYGYGRFVYG GRYYEGSPLV YASVPVFPPA MRVPPPAPPQ PSATRKLRLF 240 GVDVEESSSS GETRGEMGVA GHSSSSPVVI RDDDQSPWRS PRGEMGAGTS SAMQLCDDEE 300 YKRKGKSLEL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-46 | 32 | 144 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-46 | 32 | 144 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00424 | DAP | Transfer from AT4G01500 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g055780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL161492 | 1e-141 | AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4. | |||
GenBank | CP002687 | 1e-141 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | F11O4 | 1e-141 | AF096370.1 Arabidopsis thaliana BAC F11O4. | |||
GenBank | FJ873734 | 1e-141 | FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456151.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
Swissprot | O82595 | 1e-162 | NGA4_ARATH; B3 domain-containing transcription factor NGA4 | ||||
TrEMBL | D7M4V0 | 1e-164 | D7M4V0_ARALL; Uncharacterized protein | ||||
STRING | XP_010456151.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13651 | 15 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-128 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|