PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g052360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 219aa    MW: 25198.9 Da    PI: 4.6583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g052360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.26e-311568255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrW++eLH++Fv+aveqLGG+++AtPk +l+lm+ kgL+++hvkSHLQ+YR+
  Csa13g052360.1 15 PRLRWNSELHNSFVQAVEQLGGENRATPKMVLQLMDAKGLSISHVKSHLQMYRS 68
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8451171IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-281169IPR009057Homeodomain-like
SuperFamilySSF466891.29E-131368IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-221569IPR006447Myb domain, plants
PfamPF002491.5E-61667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKNPIVRSYV RSKVPRLRWN SELHNSFVQA VEQLGGENRA TPKMVLQLMD AKGLSISHVK  60
SHLQMYRSMK LEESMQEEIL AKRSVRVTGQ VTWWQFQQYL HNYQRLRGNA NFFQNQQRQE  120
EEMYENIITF GESSNGTEEV PSDYFTCKSL YESSKAQLNK TRDDEHGDVV VAIDDDGNVV  180
DEHDDDDDDN DGTLSLNFIK TSKDEDELSL ELTLGLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g052360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740211e-44AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615011e-44AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026871e-44CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455747.11e-163PREDICTED: myb family transcription factor PHL11-like isoform X1
TrEMBLA0A1P8B8R61e-126A0A1P8B8R6_ARATH; Myb-like DNA-binding domain protein
STRINGXP_010455747.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.19e-31G2-like family protein