PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g050410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 428aa    MW: 48472.3 Da    PI: 4.5857
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g050410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.42.8e-17219277155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt eLH++F  ave++       Pk il++    m+v+gLt+++v+S LQkYR 
  Csa13g050410.1 219 KPRMSWTAELHQKFEAAVEKISRVGTPYPKDILKCmqeeMNVQGLTRNNVASQLQKYRE 277
                     79*******************88888889***9872333589****************5 PP
2Response_reg56.22e-19481521105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vd + + + l ++++ +  y +v+  ++geea++ l +++  +Dl++   +mp+++Gl++l +i  e   lp++v++ ++++e++ + +k G
  Csa13g050410.1  48 ILLVDADSNSLLLTKTLMAHYSY-QVTIYETGEEAMAFLMKSKheIDLVIWNFDMPDISGLDALNTIGIEM-YLPVVVMSHEQNKEMVMKSIKNG 140
                     7899888888888888888****.***************666667**********************5543.6********************** PP

                     ESEEEESS--HH CS
    Response_reg  94 akdflsKpfdpe 105
                     a dfl+Kp+++e
  Csa13g050410.1 141 ACDFLVKPMSKE 152
                     ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.39E-2346169IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-2546169No hitNo description
SMARTSM004481.0E-1446157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.90647162IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.5E-1648152IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-1549157No hitNo description
Gene3DG3DSA:1.10.10.604.9E-19216279IPR009057Homeodomain-like
SuperFamilySSF466891.13E-12216281IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-14219277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSNILYENSH NLRKEVSACD DETESPIINE EEEDLDEDEE FAKTSIMILL VDADSNSLLL  60
TKTLMAHYSY QVTIYETGEE AMAFLMKSKH EIDLVIWNFD MPDISGLDAL NTIGIEMYLP  120
VVVMSHEQNK EMVMKSIKNG ACDFLVKPMS KEVVAVLWQH VFRKRMMSKY GLDQPGELDT  180
VESDSDEFDN LKQDDLYHNN GEGSRNTSDQ KEVKSTSKKP RMSWTAELHQ KFEAAVEKIS  240
RVGTPYPKDI LKCMQEEMNV QGLTRNNVAS QLQKYRESYN KKTCSPQETC QEDFNWRNAG  300
QDPPLTASNP LLSSNVNLQT TPPFCMTDQA APRSSHFMND QATVNAPYSS SGYPPMNNFI  360
MANHVTYIPQ PPQFHHSLNL PSMLPKQELG HVSSAIDNSE LIYNPNLPFG YGEYFPHAGF  420
NNNNTNS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g050410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456884.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-161ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010456884.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-136response regulator 20