PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g047340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | DBB | ||||||||
Protein Properties | Length: 162aa MW: 17565.6 Da PI: 4.993 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18 | 5.9e-06 | 4 | 45 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +e+ e++ C +++ lC+ C + H+ H+v Csa13g047340.1 4 LCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnkifqrhHRV 45 7*****************************767888884444 PP | |||||||
2 | zf-B_box | 26.2 | 1.6e-08 | 60 | 97 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38 ++ C+ ++e + +fC +++ llC+dC ++H ++H+ Csa13g047340.1 60 APLCDICQERKGYFFCIEDRALLCNDCDGAIHtcNSHQ 97 689******99********************9434487 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.44E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 4.4E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.186 | 58 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-11 | 58 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-6 | 60 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.05E-7 | 61 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKILCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKIFQ RHHRVALQKD AASATTSSGA 60 PLCDICQERK GYFFCIEDRA LLCNDCDGAI HTCNSHQRFL LPGVQVSDQS LTENSGCSTS 120 FSSETYQTHS KASLNSQYSN EETEAGNSAA IDKNPSVILN P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g047340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY122916 | 0.0 | AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421942.1 | 1e-116 | PREDICTED: B-box zinc finger protein 23-like | ||||
Refseq | XP_010455422.1 | 1e-116 | PREDICTED: B-box zinc finger protein 23-like | ||||
Swissprot | O82617 | 1e-95 | BBX23_ARATH; B-box zinc finger protein 23 | ||||
TrEMBL | D7LY29 | 1e-98 | D7LY29_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | XP_010421942.1 | 1e-116 | (Camelina sativa) | ||||
STRING | XP_010455422.1 | 1e-116 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12502 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10240.1 | 4e-98 | DBB family protein |
Publications ? help Back to Top | |||
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