PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g040240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 388aa    MW: 44547.4 Da    PI: 6.7901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g040240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001681103323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+   Cgk+F + s L++H   H
  Csa13g040240.1  81 CSydGCGKTFFDVSALRKHSHIH 103
                     78889**************7766 PP
2zf-C2H216.72e-05108132123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk F ++s LkrH   H
  Csa13g040240.1 108 YVCNhaGCGKKFLDSSKLKRHYLIH 132
                     99*******************9988 PP
3zf-C2H220.41.3e-06138162123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk Fs   nL++H++tH
  Csa13g040240.1 138 FVCTyeGCGKAFSLDFNLRSHMKTH 162
                     89**********************9 PP
4zf-C2H213.10.00028168193123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     + Cp   Cgk++ + + Lk+H    H
  Csa13g040240.1 168 HICPysGCGKRYAHEYKLKNHVIAyH 193
                     68*******************87655 PP
5zf-C2H212.90.00033230255123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   C k + + + Lk H+++ H
  Csa13g040240.1 230 YACPyeGCEKAYIHEYKLKLHLKReH 255
                     89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-1474104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94979108IPR007087Zinc finger, C2H2
SMARTSM003550.005379103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-982132No hitNo description
Gene3DG3DSA:3.30.160.602.3E-13105127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.5E-4108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.42108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-15119173No hitNo description
Gene3DG3DSA:3.30.160.608.9E-21128164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757138167IPR007087Zinc finger, C2H2
SMARTSM003557.2E-4138162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-7165189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01168193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-5225253No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8227252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533230260IPR007087Zinc finger, C2H2
SMARTSM003550.012230255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEHPNYPYQN PFERRPILKS KAPAVKWIKE WVPQDIVATG GKCYLHKWVT EDTLKRLKEK  60
EKEPDVPEPE PEPTTEILFL CSYDGCGKTF FDVSALRKHS HIHGERQYVC NHAGCGKKFL  120
DSSKLKRHYL IHTGERAFVC TYEGCGKAFS LDFNLRSHMK THSQENYHIC PYSGCGKRYA  180
HEYKLKNHVI AYHEKNGAGE TPKYTPPAEK VSRTVKTPAA VFGASPDRPY ACPYEGCEKA  240
YIHEYKLKLH LKREHPGHLP EENAENPTLN KHSGNDRNDI DNGSDQDVYR KHASNGKSQS  300
HKQQSRTKPN MRTPPAKVGK KGSTSSPAKV RIANKPWQAK EAFEEVEREE LEEDSEETEE  360
DRENVDDGWR FGENNEEDDD EETEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-38811928117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g040240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0731620.0AB073162.1 Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F8H12.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455217.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L30.0YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLR0H7H00.0R0H7H0_9BRAS; Uncharacterized protein
STRINGXP_010455217.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.10.0C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]