PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g039160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 415aa    MW: 46865 Da    PI: 5.605
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g039160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.5e-32232286155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGs++AtPk++l+l++ + Lt++hvkSHLQkYR+
  Csa13g039160.1 232 KQRMRWTPELHESFVEAVNQLGGSDRATPKAVLKLLNNPVLTIYHVKSHLQKYRT 286
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-29230288IPR009057Homeodomain-like
SuperFamilySSF466891.54E-16230286IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22232286IPR006447Myb domain, plants
PfamPF002494.4E-9234285IPR001005SANT/Myb domain
PfamPF143799.0E-22320366IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTLANDFGYS TTMSSSFSAL HPTVEDRYRK FPNSFWVSGQ ELMNNPVPCQ SVSGGNSGGY  60
LFSSSSGFCN VSAVSPHGRN SQTQPPVSTV PRDRLAMQDC TLEAQSSSLI NHHQPQEFTD  120
PLQEFFDFSD HVPVQHLQAE ESGVRVDSSV ELHKKSEWQD WADQLISVDD GSEPNWSDFL  180
GDPRSHNQNS EIPMPFSDVP RQEIKANQQH QMVLSEEQLI GRNASSSVAT SKQRMRWTPE  240
LHESFVEAVN QLGGSDRATP KAVLKLLNNP VLTIYHVKSH LQKYRTARYK PETSEVTGEP  300
QEKKLTSMED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRTLQLQI EKQGRYLQMM  360
FEKQQKIQEN KSSCSEASPK QCNDTSAEVE FGLDTRTVEQ AESPSASRKR VRED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-26232290260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g039160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023440.0BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455200.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
RefseqXP_010455201.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLR0H7990.0R0H799_9BRAS; Uncharacterized protein
STRINGXP_010455201.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]