PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g039150.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 325aa MW: 35140.1 Da PI: 7.7095

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g039150.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48	2.7e-15	162	213	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ Csa13g039150.1 162 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 213 79****************************************9988776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-17	159	223	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-11	161	213	No hit	No description
PROSITE profile	PS50217	10.829	161	212	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-13	162	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.88E-12	163	212	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.8E-12	230	273	IPR020983	Basic leucine-zipper, C-terminal
Pfam	PF12498	2.3E-5	291	319	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEKVFSIEEI SGEHHRSTVD GTTAMNRSAS EWAFHRFIQE SSAAADDANA GESSATASGV 60 SVSSPPNVPV DSEEYRAFLK SKLNLACAAV AMKRGSFIKP QDTTSGRSDD GGGAYTTNTS 120 EQGSLGSSKV SPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR 180 RKQAHLSELE TQVSQLRVEN SNLMKGLTDV TQTFNDAAVE NRVLKANIET LRAKVKMAEE 240 TVKRLTGFNP MFHTMPQIVT TVSLPSETST SPDTTSSHLT APEIDSSGNK SKALIGCKMN 300 RTASMRRVES LEHLQKRIRS VGDQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	182	RRSRRRKQ
2	177	182	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g039150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317169	0.0	AK317169.1 Arabidopsis thaliana AT5G28770 mRNA, complete cds, clone: RAFL21-54-H13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010455198.1	0.0	PREDICTED: basic leucine zipper 63 isoform X1
Swissprot	B9DGI8	0.0	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	A0A178UKA3	0.0	A0A178UKA3_ARATH; BZO2H3
STRING	XP_010455198.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-159	bZIP family protein

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]