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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa13g039150.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
bZIP |
| Protein Properties |
Length: 325aa MW: 35140.1 Da PI: 7.7095 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa13g039150.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 48 | 2.7e-15 | 162 | 213 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
+kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++
Csa13g039150.1 162 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 213
79****************************************9988776665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MEKVFSIEEI SGEHHRSTVD GTTAMNRSAS EWAFHRFIQE SSAAADDANA GESSATASGV 60
SVSSPPNVPV DSEEYRAFLK SKLNLACAAV AMKRGSFIKP QDTTSGRSDD GGGAYTTNTS 120
EQGSLGSSKV SPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR 180
RKQAHLSELE TQVSQLRVEN SNLMKGLTDV TQTFNDAAVE NRVLKANIET LRAKVKMAEE 240
TVKRLTGFNP MFHTMPQIVT TVSLPSETST SPDTTSSHLT APEIDSSGNK SKALIGCKMN 300
RTASMRRVES LEHLQKRIRS VGDQ*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 175 | 182 | RRSRRRKQ |
| 2 | 177 | 182 | SRRRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK317169 | 0.0 | AK317169.1 Arabidopsis thaliana AT5G28770 mRNA, complete cds, clone: RAFL21-54-H13. |
| Publications
? help Back to Top |
- Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
Plant Methods, 2010. 6: p. 25
[PMID:21108821] - Brand LH, et al.
Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
PLoS ONE, 2013. 8(10): p. e75177
[PMID:24146751] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Mair A, et al.
SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
Elife, 2016.
[PMID:26263501] - Pedrotti L, et al.
Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
Plant Cell, 2018. 30(2): p. 495-509
[PMID:29348240]
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