PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g037960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 607aa    MW: 69445.1 Da    PI: 6.9522
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g037960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.62.5e-1697168278
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                     W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++++ +  ++ s+
  Csa13g037960.1  97 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEDEERRYFNGNNNNNTNDHQHISN 168
                     ********************998.....9*********************************999999876666554 PP
2trihelix103.61.5e-32450544186
        trihelix   1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rW+k+evlaLi++rr          +++++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql
  Csa13g037960.1 450 RWPKDEVLALINIRRsissmndddhKDGNSLSSSSKAVPLWERISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQL 543
                     8**************99999999888888999999*********************************************8.9***********9 PP

        trihelix  86 e 86 
                     +
  Csa13g037960.1 544 T 544
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-1195162No hitNo description
PROSITE profilePS500905.47196148IPR017877Myb-like domain
CDDcd122031.59E-25449524No hitNo description
PfamPF138371.1E-19449545No hitNo description
PROSITE profilePS500906.98450517IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASPPPA SPLPPHQSAA ERSLPFPVSF ASYNTNHQAQ HILSLDSRKT  60
IHHHHHHHHH DIKDGGPTPA EWICHTDHDG DNHHHPWCSD EVLALLRFRS TVENWFPEFT  120
WEHTSRKLAE VGFKRSPQEC KEKFEDEERR YFNGNNNNNT NDHQHISNYN NKGNSYRIFS  180
EVEEFYQHGH DDEHVSSEVG DNQNKRNNSL ERKRNVEETV QDLMEEDKLR DQDQGQVEEA  240
SMGNKINSIN VGKVGNVEDD AKSSSSSSLM MIMREKKKRK RKKEKERFGV LKGFCEGLVR  300
SMIAQQEEMH KKLLEDMVTK EEEKIAREED WKKQEMERLN KEVEIRKQEQ AIASDRNTNI  360
IKFISKFTDH DLDVEIPTSA FQDPSSLALP QTQGSKKFQT SSSLLHQTLT PHNPLTNDNS  420
LEPTSTKTLK TKTQNPKPPK SDDKSDLGKR WPKDEVLALI NIRRSISSMN DDDHKDGNSL  480
SSSSKAVPLW ERISKKMLEV GYKRSAKRCK EKWENINKYF RKTKDVNKKR PLDSRTCPYF  540
HQLTALYSKP STGTTTTATA TSAGDLQTRP EVGSEDPDIP APMHVDAADG AGDKSNVPFS  600
GFDLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KKRKRK
2276282KKRKRKK
3277285KRKRKKEKE
4278282RKRKK
5278283RKRKKE
6278284RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g037960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0004610.0BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0083890.0BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455171.10.0PREDICTED: trihelix transcription factor GTL2-like
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A178UB250.0A0A178UB25_ARATH; GT2L
STRINGXP_010455171.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]