PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g037810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 424aa    MW: 46245.8 Da    PI: 4.7433
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g037810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.44e-37124222298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+k
  Csa13g037810.1 124 LFQRLWTDEDEIELLRGFLDYiTSHRGYSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRK 218
                     79*******************9999***99999************************************************************** PP

          DUF573  95 iWgs 98 
                     iW++
  Csa13g037810.1 219 IWNQ 222
                     **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.7E-34125221IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASDQRDTVF SVESPDLENG GGGSGGGGVG GETESDEDVV MPEPNEAEED DPEYEDLNSP  60
SMVSAISTAP AAAKSSSSTG TVTVALPAGS AVPVASIPSD SDQKWHRMTE IVHQRPPIDD  120
SRRLFQRLWT DEDEIELLRG FLDYITSHRG YSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE  180
KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNSVMDFEET  240
NHVNNTNGSS SFNISMCNAN ADVVDLENGL EKKVTMSRKR SRSRIGKMDE DKPVLAPCDG  300
PPNAVNLNEN VAAVGEFSDG RNLGGLIEET VKNCVSPMIK EMMNGTTGMM MAAMGGFPGG  360
GAHGLGVLSP ILMNVGFGGK GAGDERWRRQ QILELEVYLR RLELVQEQIR ATVNELKTLP  420
NGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g037810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455163.10.0PREDICTED: probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLR0H7660.0R0H766_9BRAS; Uncharacterized protein
STRINGXP_010455163.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]