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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g035000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 284aa MW: 31287.3 Da PI: 8.6032 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H++ H Csa13g035000.1 81 YTCHFCKKGFSTSQALGGHQNAH 103 9*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.29E-7 | 78 | 108 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 79 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.822 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MENQAMSSSG SSTPKPEKLK GVVVATEKSK EKATRNTDLK LGSPQEVTSD RRTENLCFGS 60 SDVRRGREIM KIYPSKLNKI YTCHFCKKGF STSQALGGHQ NAHKQEREWD KKRKEMEADF 120 PGLAFLNPYL DKPHILLGGY SQDALSNENH LGITLDPFKR LVYPSFNRGV LGGLADMNVT 180 VVPRVTPTRF FTGNASTNDT ASRVPDPLPK RSCPLISRNV FPFPAPRATK LSSDVALQEN 240 VLTEENFISK IGTNNVVVID DDDDIQPEED KSKSGGIDLS LSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g035000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007399 | 1e-175 | AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence. | |||
GenBank | CP002688 | 1e-175 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456743.1 | 0.0 | PREDICTED: uncharacterized protein LOC104738235 | ||||
TrEMBL | D7M5G8 | 1e-152 | D7M5G8_ARALL; Zinc finger family protein | ||||
STRING | XP_010456743.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 1e-137 | C2H2 family protein |