PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g033990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 374aa    MW: 42728.8 Da    PI: 6.16
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g033990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix881.1e-2747132286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     W ++e+l Li +r em++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+n+ k++kk k+++ k  t++   ++ y++++e
  Csa13g033990.1  47 WVQDETLSLISLRGEMDNLFNTSKSNKHLWEQISSKMREQGFDRSPTMCTDKWRNILKEFKKAKHQDDKAtTNGGAAKMCYYKEIE 132
                     ********************************************************************996689999999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-438108IPR009057Homeodomain-like
PROSITE profilePS500908.22339103IPR017877Myb-like domain
SMARTSM007177.7E-443105IPR001005SANT/Myb domain
CDDcd122036.59E-3045110No hitNo description
PfamPF138376.2E-1946133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMIDVTTSNG DLPTQQQHHH HHQIILGDSS GGEDHEIKTP KKRAETWVQD ETLSLISLRG  60
EMDNLFNTSK SNKHLWEQIS SKMREQGFDR SPTMCTDKWR NILKEFKKAK HQDDKATTNG  120
GAAKMCYYKE IEDIFRERNK KVALYKSHAT PPPSSSAKVD SFMQFTDKGF EDSSISFTSV  180
EANGRPTLNL ETQLDHDSLP LAIASADPAT ANGIPPWNWR DASGNGGDGH PFVGRIITVK  240
FGEYTRRVGI DGTAEAIKEA IRSAFRLRTR RAFWLEDEEQ VVRSLDRDMP LGNYTLHVDE  300
GIAVRVCHYD ESDPLPVHQE EKIFYTEEDY RDFLARRGWT CLREFDAFRN IDMVRNIDNM  360
DDIQPGVLYR GMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4241130186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g033990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514227.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X1
RefseqXP_010514228.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X2
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLR0HJX10.0R0HJX1_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010454951.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein