PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g033680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 468aa    MW: 51798.7 Da    PI: 7.6273
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g033680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR482.5e-15103142241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+CnCk+skClk+YCeCfa+g++C+ +C+C +C+N+ e
  Csa13g033680.1 103 QQKRCNCKNSKCLKLYCECFASGSYCNGSCNCLNCHNNLE 142
                     79***********************************976 PP
2TCR51.52e-16188227140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeC++a++ Cse+CkC+dCkN e
  Csa13g033680.1 188 KHSKGCHCKKSGCLKKYCECYQANVLCSENCKCQDCKNFE 227
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15102143IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.287103228IPR005172CRC domain
PfamPF036386.6E-12104140IPR005172CRC domain
SMARTSM011144.4E-19188229IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.6E-13191226IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEEDSSSNQN PPQSDFSISA KIDSFQKSLE PPPPPSPTSP VKSSQESATE VTPPQKPPLH  60
RFVHNQVHMN QSGGNCRVSN QDPLTTSRGQ TELESLDNTP NKQQKRCNCK NSKCLKLYCE  120
CFASGSYCNG SCNCLNCHNN LEKEGSRQEA VTTILDRNPD AFKPKIAGSP HGIKDLQENA  180
RKMLLLGKHS KGCHCKKSGC LKKYCECYQA NVLCSENCKC QDCKNFEGSE ERNALLHGPQ  240
LSETYIQQTT NAAVNRAIDM SGFLNPPESR KRKSKDALHS HVVQNQRANH VVRNGDTSLF  300
SLPNDKAVSG FTTCAYRSSL SNIIQPHHVR ELCSLLVSKS VDVANKLSGA KCETDKRKDP  360
SLDQAQRGAN VINDSPDCVL DTNRIEEKPL SPTTRTLMCD EEHEIGSEKD TFARVKTSQE  420
KEDTDTSSEV YLEQERQILS SFRDYLIQLS NRGSLNGKNT KADTNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-32962373132Protein lin-54 homolog
5fd3_B2e-32962373132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g033680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054055e-95AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026885e-95CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454918.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLR0HA940.0R0HA94_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010454918.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein