PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g031400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 285aa    MW: 32274.6 Da    PI: 5.4478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g031400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.5e-12281131099
                     HHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  10 vlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ks+ l ++p +f+ + +g    +  +++  ++g+sW++ l  ++ ++  y++++ W eFv++n+L  +D + F++d+++ f l v++f++
  Csa13g031400.1  28 NWKSNSLrIIPDEFVGSTSGA--FEHRIVISVRWGNSWQLWL--EREKDDlYMIEEDWDEFVDDNHLGPNDNLFFRHDDTM-F-LEVQIFKN 113
                     5555444399*****999666..34469999***********..7777777*************************87644.4.58998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1713114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-1615115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.19E-1317112No hitNo description
SMARTSM010191.4E-1519114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.58920114IPR003340B3 DNA binding domain
PfamPF023622.5E-1023113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-11179268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-8180273IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-8186282IPR003340B3 DNA binding domain
PROSITE profilePS508636.372244278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLPKGVIAKI QANVSKPCFW KFLSPGQNWK SNSLRIIPDE FVGSTSGAFE HRIVISVRWG  60
NSWQLWLERE KDDLYMIEED WDEFVDDNHL GPNDNLFFRH DDTMFLEVQI FKNNGDEIMD  120
VPLEVEPETE PLHSNPQSSY KDTTTASASA SVEFSANGGT NGRAKEGCAD IKNPERYLLN  180
PENPYFVKTL SKKIDVLYVP KTVIQKYGLK FGPHDSTMSY LLPEDKINGL TKLYLGGKMV  240
CFNGWVGLCR KYNLKAGDSV VSELERSGGL VTAVRVRFFN ENMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g031400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454875.10.0PREDICTED: B3 domain-containing protein At5g25470-like
RefseqXP_010454876.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-139Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLD7M3Z51e-153D7M3Z5_ARALL; Predicted protein
STRINGXP_010454875.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-140B3 family protein