PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g028170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 343aa    MW: 38077.8 Da    PI: 9.5715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g028170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-071256345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W+ ++d  l +a + +  +   +W+ Ia+ ++ g+t +q+++r++
   Csa13g028170.1 12 SWSRDDDIALERALAIYDDEtqiCWENIAAVVP-GKTTEQIIERYN 56
                     7*****************99*************.**********97 PP
2Myb_DNA-binding31.83.3e-10102146347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT  E+ +++ +  ++G+g+W +I+r    +Rt+ q+ s+ qky
   Csa13g028170.1 102 SWTSNEHRQFLIGLDKYGKGDWLSISRNSVRTRTPTQVASHAQKY 146
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.844862IPR017884SANT domain
SMARTSM007171.9E-9961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-51160IPR009057Homeodomain-like
SuperFamilySSF466897.48E-111167IPR009057Homeodomain-like
CDDcd001675.76E-91256No hitNo description
PfamPF002493.0E-61256IPR001005SANT/Myb domain
PROSITE profilePS5129415.88195151IPR017930Myb domain
SuperFamilySSF466891.64E-1596152IPR009057Homeodomain-like
SMARTSM007175.7E-699149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-899146IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-1499149IPR006447Myb domain, plants
CDDcd001672.24E-6102147No hitNo description
PfamPF002492.1E-7102146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNLGWNTSVG SSWSRDDDIA LERALAIYDD ETQICWENIA AVVPGKTTEQ IIERYNILVR  60
DVMDIESGRV PLPDYGVPEE PNPNARGKGK EKLTHKRRKG VSWTSNEHRQ FLIGLDKYGK  120
GDWLSISRNS VRTRTPTQVA SHAQKYFQRL NSKNKHRNRA SIHDITVDEE NRNISPKQEA  180
IRTWQNGNVN LASTSNNQAI QTTSQPSLDL PMHGRPHIWN TQAISQPSLN LPTYGAPTIW  240
NAQAALPPRP PPPCTIWNAQ AALPPPPASI PVYGTTLSTM NQPMVGPMPS HFGTNMNHFA  300
QPHMTPGVQH YPLPSYPGPS APINMGSSIP YGDMTYATKS QR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-131075873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g028170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456658.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN62e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLD7M2B81e-128D7M2B8_ARALL; Predicted protein
STRINGXP_010456658.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-127Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]